Domain ID e2gh8C1

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  • A: beta sandwiches
  • X: jelly-roll
  • H: Nucleoplasmin-like/VP (viral coat and capsid proteins)
  • T: Nucleoplasmin-like/VP (viral coat and capsid proteins)
  • F: Calici_coat
UID: 001696069
Type: Automatic domain
Parent: e2gh8A1
Range: C:160-359
PDB: 2gh8
PDB Description: Capsid protein
UniProt: P36285
Species:

Structure of domain e2gh8C1

Domains in the same chain:

e2gh8C1 C:160-359 jelly-roll Nucleoplasmin-like/VP (viral coat and capsid proteins) Nucleoplasmin-like/VP (viral coat and capsid proteins)
e2gh8C2 C:360-419,C:590-703 cradle loop barrel Capsid protein protrusion (P) domain Capsid protein protrusion (P) domain
e2gh8C3 C:420-589 cradle loop barrel Capsid protein protrusion (P) domain Capsid protein protrusion (P) domain

Domains in the same PDB:

e2gh8A1 A:160-359 jelly-roll Nucleoplasmin-like/VP (viral coat and capsid proteins) Nucleoplasmin-like/VP (viral coat and capsid proteins)
e2gh8A2 A:360-419,A:590-703 cradle loop barrel Capsid protein protrusion (P) domain Capsid protein protrusion (P) domain
e2gh8A3 A:420-589 cradle loop barrel Capsid protein protrusion (P) domain Capsid protein protrusion (P) domain
e2gh8B2 B:163-359 jelly-roll Nucleoplasmin-like/VP (viral coat and capsid proteins) Nucleoplasmin-like/VP (viral coat and capsid proteins)
e2gh8B1 B:360-419,B:590-703 cradle loop barrel Capsid protein protrusion (P) domain Capsid protein protrusion (P) domain
e2gh8B3 B:420-589 cradle loop barrel Capsid protein protrusion (P) domain Capsid protein protrusion (P) domain
e2gh8C1 C:160-359 jelly-roll Nucleoplasmin-like/VP (viral coat and capsid proteins) Nucleoplasmin-like/VP (viral coat and capsid proteins)
e2gh8C2 C:360-419,C:590-703 cradle loop barrel Capsid protein protrusion (P) domain Capsid protein protrusion (P) domain
e2gh8C3 C:420-589 cradle loop barrel Capsid protein protrusion (P) domain Capsid protein protrusion (P) domain

Structural contacts of domain e2gh8C1 of H-group "Nucleoplasmin-like/VP (viral coat and capsid proteins)":

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The domain and its neighboring domains (both within the asymmetric unit and to crystallographic symmetry mates) are represented by spheres and linked by lines. Distances between the center of the domain and interfaces are shown for each contact.

Domain IDSymmetry operatorH-groupVisualization
e2gh8C1 C:x,y,z->C:-X,-Y,Z Nucleoplasmin-like/VP (viral coat and capsid proteins) Interaction Interface Pymol
e2gh8C2 C:x,y,z->C:-X,-Y,Z Capsid protein protrusion (P) domain Interaction Interface Pymol
e2gh8C2 C:-X,-Y,Z->C:x,y,z Capsid protein protrusion (P) domain Interaction Interface Pymol
e2gh8C1 C:-X,-Y,Z->C:x,y,z Nucleoplasmin-like/VP (viral coat and capsid proteins) Interaction Interface Pymol
e2gh8A2 C:x,y,z->A:X,Y,Z Capsid protein protrusion (P) domain Interaction Interface Pymol
e2gh8A1 C:x,y,z->A:X,Y,Z Nucleoplasmin-like/VP (viral coat and capsid proteins) Interaction Interface Pymol
e2gh8B2 C:x,y,z->B:X,Y,Z Nucleoplasmin-like/VP (viral coat and capsid proteins) Interaction Interface Pymol
e2gh8B2 C:x,y,z->B:-X,-Y,Z Nucleoplasmin-like/VP (viral coat and capsid proteins) Interaction Interface Pymol
e2gh8A1 C:x,y,z->A:-X,-Y,Z Nucleoplasmin-like/VP (viral coat and capsid proteins) Interaction Interface Pymol