Domain ID e2nn6B1

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  • A: a+b two layers
  • X: Ribonuclease PH domain 2-like
  • H: Ribonuclease PH domain 2
  • T: Ribonuclease PH domain 2
  • F: RNase_PH_C
UID: 000005778
Type: Manual and representative domain
Range: B:151-240
PDB: 2nn6
PDB Description: EXOSOME COMPLEX EXONUCLEASE RRP41
UniProt: Q9NPD3
Hsap BLAST neighbor: Q9NPD3
Species: Homo sapiens

Structure of domain e2nn6B1

Domains in the same chain:

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e2nn6B2 B:6-150 Ribosomal protein S5 domain 2-like Ribosomal protein S5 domain 2-like Ribosomal protein S5 domain 2-like
e2nn6B1 B:151-240 Ribonuclease PH domain 2-like Ribonuclease PH domain 2 Ribonuclease PH domain 2

Domains in the same PDB:

e2nn6A2 A:1-184 Ribosomal protein S5 domain 2-like Ribosomal protein S5 domain 2-like Ribosomal protein S5 domain 2-like
e2nn6A1 A:185-302 Ribonuclease PH domain 2-like Ribonuclease PH domain 2 Ribonuclease PH domain 2
e2nn6B2 B:6-150 Ribosomal protein S5 domain 2-like Ribosomal protein S5 domain 2-like Ribosomal protein S5 domain 2-like
e2nn6B1 B:151-240 Ribonuclease PH domain 2-like Ribonuclease PH domain 2 Ribonuclease PH domain 2
e2nn6C2 C:7-187 Ribosomal protein S5 domain 2-like Ribosomal protein S5 domain 2-like Ribosomal protein S5 domain 2-like
e2nn6C1 C:188-276 Ribonuclease PH domain 2-like Ribonuclease PH domain 2 Ribonuclease PH domain 2
e2nn6D2 D:25-146 Ribosomal protein S5 domain 2-like Ribosomal protein S5 domain 2-like Ribosomal protein S5 domain 2-like
e2nn6D1 D:147-235 Ribonuclease PH domain 2-like Ribonuclease PH domain 2 Ribonuclease PH domain 2
e2nn6E2 E:5-191 Ribosomal protein S5 domain 2-like Ribosomal protein S5 domain 2-like Ribosomal protein S5 domain 2-like
e2nn6E1 E:192-285 Ribonuclease PH domain 2-like Ribonuclease PH domain 2 Ribonuclease PH domain 2
e2nn6F2 F:29-72,F:92-175 Ribosomal protein S5 domain 2-like Ribosomal protein S5 domain 2-like Ribosomal protein S5 domain 2-like
e2nn6F1 F:176-270 Ribonuclease PH domain 2-like Ribonuclease PH domain 2 Ribonuclease PH domain 2
e2nn6G3 G:16-50,G:74-106 alpha/beta-Hammerhead/Barrel-sandwich hybrid alpha/beta-Hammerhead/Barrel-sandwich hybrid Ribosomal L27 protein
e2nn6G1 G:107-193 OB-fold Nucleic acid-binding proteins Nucleic acid-binding proteins
e2nn6G2 G:195-274 Alpha-lytic protease prodomain-like KH-domains Eukaryotic type KH-domain (KH-domain type I)
e2nn6H3 H:25-72 alpha/beta-Hammerhead/Barrel-sandwich hybrid alpha/beta-Hammerhead/Barrel-sandwich hybrid Ribosomal L27 protein
e2nn6H1 H:73-167 OB-fold Nucleic acid-binding proteins Nucleic acid-binding proteins
e2nn6H2 H:168-293 Alpha-lytic protease prodomain-like KH-domains Eukaryotic type KH-domain (KH-domain type I)
e2nn6I2 I:6-60 alpha/beta-Hammerhead/Barrel-sandwich hybrid alpha/beta-Hammerhead/Barrel-sandwich hybrid Ribosomal L27 protein
e2nn6I1 I:61-185 OB-fold Nucleic acid-binding proteins Nucleic acid-binding proteins

Structural contacts of domain e2nn6B1 of H-group "Ribonuclease PH domain 2":

The domain and its neighboring domains (both within the asymmetric unit and to crystallographic symmetry mates) are represented by spheres and linked by lines. Distances between the center of the domain and interfaces are shown for each contact.

Domain IDSymmetry operatorH-groupVisualization
e2nn6A2 B:x,y,z->A:X,Y,Z Ribosomal protein S5 domain 2-like Interaction Interface Pymol
e2nn6A1 B:x,y,z->A:X,Y,Z Ribonuclease PH domain 2 Interaction Interface Pymol
e2nn6H3 B:X,Y,Z->H:x,y,z alpha/beta-Hammerhead/Barrel-sandwich hybrid Interaction Interface Pymol
e2nn6B1 B:x,y,z->B:Z,-Y,X Ribonuclease PH domain 2 Interaction Interface Pymol
e2nn6B1 B:Z,-Y,X->B:x,y,z Ribonuclease PH domain 2 Interaction Interface Pymol
e2nn6A1 B:x,y,z->A:Z,-Y,X Ribonuclease PH domain 2 Interaction Interface Pymol