Domain ID e2nn6G1

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  • A: beta barrels
  • X: OB-fold
  • H: Nucleic acid-binding proteins
  • T: Nucleic acid-binding proteins
  • F: RRP40_S1
UID: 000024068
Type: Automatic domain
Parent: e2ja9A1
Range: G:107-193
PDB: 2nn6
PDB Description: EXOSOME COMPLEX EXONUCLEASE RRP40
UniProt: Q9NQT5
Hsap BLAST neighbor: Q9NQT5
Species: Homo sapiens

Structure of domain e2nn6G1

Domains in the same chain:

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e2nn6G3 G:16-50,G:74-106 alpha/beta-Hammerhead/Barrel-sandwich hybrid alpha/beta-Hammerhead/Barrel-sandwich hybrid Ribosomal L27 protein
e2nn6G1 G:107-193 OB-fold Nucleic acid-binding proteins Nucleic acid-binding proteins
e2nn6G2 G:195-274 Alpha-lytic protease prodomain-like KH-domains Eukaryotic type KH-domain (KH-domain type I)

Domains in the same PDB:

e2nn6A2 A:1-184 Ribosomal protein S5 domain 2-like Ribosomal protein S5 domain 2-like Ribosomal protein S5 domain 2-like
e2nn6A1 A:185-302 Ribonuclease PH domain 2-like Ribonuclease PH domain 2 Ribonuclease PH domain 2
e2nn6B2 B:6-150 Ribosomal protein S5 domain 2-like Ribosomal protein S5 domain 2-like Ribosomal protein S5 domain 2-like
e2nn6B1 B:151-240 Ribonuclease PH domain 2-like Ribonuclease PH domain 2 Ribonuclease PH domain 2
e2nn6C2 C:7-187 Ribosomal protein S5 domain 2-like Ribosomal protein S5 domain 2-like Ribosomal protein S5 domain 2-like
e2nn6C1 C:188-276 Ribonuclease PH domain 2-like Ribonuclease PH domain 2 Ribonuclease PH domain 2
e2nn6D2 D:25-146 Ribosomal protein S5 domain 2-like Ribosomal protein S5 domain 2-like Ribosomal protein S5 domain 2-like
e2nn6D1 D:147-235 Ribonuclease PH domain 2-like Ribonuclease PH domain 2 Ribonuclease PH domain 2
e2nn6E2 E:5-191 Ribosomal protein S5 domain 2-like Ribosomal protein S5 domain 2-like Ribosomal protein S5 domain 2-like
e2nn6E1 E:192-285 Ribonuclease PH domain 2-like Ribonuclease PH domain 2 Ribonuclease PH domain 2
e2nn6F2 F:29-72,F:92-175 Ribosomal protein S5 domain 2-like Ribosomal protein S5 domain 2-like Ribosomal protein S5 domain 2-like
e2nn6F1 F:176-270 Ribonuclease PH domain 2-like Ribonuclease PH domain 2 Ribonuclease PH domain 2
e2nn6G3 G:16-50,G:74-106 alpha/beta-Hammerhead/Barrel-sandwich hybrid alpha/beta-Hammerhead/Barrel-sandwich hybrid Ribosomal L27 protein
e2nn6G1 G:107-193 OB-fold Nucleic acid-binding proteins Nucleic acid-binding proteins
e2nn6G2 G:195-274 Alpha-lytic protease prodomain-like KH-domains Eukaryotic type KH-domain (KH-domain type I)
e2nn6H3 H:25-72 alpha/beta-Hammerhead/Barrel-sandwich hybrid alpha/beta-Hammerhead/Barrel-sandwich hybrid Ribosomal L27 protein
e2nn6H1 H:73-167 OB-fold Nucleic acid-binding proteins Nucleic acid-binding proteins
e2nn6H2 H:168-293 Alpha-lytic protease prodomain-like KH-domains Eukaryotic type KH-domain (KH-domain type I)
e2nn6I2 I:6-60 alpha/beta-Hammerhead/Barrel-sandwich hybrid alpha/beta-Hammerhead/Barrel-sandwich hybrid Ribosomal L27 protein
e2nn6I1 I:61-185 OB-fold Nucleic acid-binding proteins Nucleic acid-binding proteins

Structural contacts of domain e2nn6G1 of H-group "Nucleic acid-binding proteins":

The domain and its neighboring domains (both within the asymmetric unit and to crystallographic symmetry mates) are represented by spheres and linked by lines. Distances between the center of the domain and interfaces are shown for each contact.

Domain IDSymmetry operatorH-groupVisualization
e2nn6D2 G:x,y,z->D:X,Y,Z Ribosomal protein S5 domain 2-like Interaction Interface Pymol
e2nn6I1 G:X,Y,Z->I:x,y,z Nucleic acid-binding proteins Interaction Interface Pymol
e2nn6A2 G:x,y,z->A:X,Y,Z Ribosomal protein S5 domain 2-like Interaction Interface Pymol