ECOD: domain e2nn6C2

Domain ID e2nn6C2

A: a+b two layers
X: Ribosomal protein S5 domain 2-like
H: Ribosomal protein S5 domain 2-like
T: Ribosomal protein S5 domain 2-like
F: RNase_PH

UID:	000006020
Type:	Manual and representative domain
Range:	C:7-187
PDB:	2nn6
PDB Description:	EXOSOME COMPLEX EXONUCLEASE RRP43
UniProt:	Q96B26
Hsap BLAST neighbor:	Q96B26
Species:	Homo sapiens

Domains in the same chain:

Download Pymol

e2nn6C2	C:7-187	Ribosomal protein S5 domain 2-like	Ribosomal protein S5 domain 2-like	Ribosomal protein S5 domain 2-like
e2nn6C1	C:188-276	Ribonuclease PH domain 2-like	Ribonuclease PH domain 2	Ribonuclease PH domain 2

Domains in the same PDB:

e2nn6A2	A:1-184	Ribosomal protein S5 domain 2-like	Ribosomal protein S5 domain 2-like	Ribosomal protein S5 domain 2-like
e2nn6A1	A:185-302	Ribonuclease PH domain 2-like	Ribonuclease PH domain 2	Ribonuclease PH domain 2
e2nn6B2	B:6-150	Ribosomal protein S5 domain 2-like	Ribosomal protein S5 domain 2-like	Ribosomal protein S5 domain 2-like
e2nn6B1	B:151-240	Ribonuclease PH domain 2-like	Ribonuclease PH domain 2	Ribonuclease PH domain 2
e2nn6C2	C:7-187	Ribosomal protein S5 domain 2-like	Ribosomal protein S5 domain 2-like	Ribosomal protein S5 domain 2-like
e2nn6C1	C:188-276	Ribonuclease PH domain 2-like	Ribonuclease PH domain 2	Ribonuclease PH domain 2
e2nn6D2	D:25-146	Ribosomal protein S5 domain 2-like	Ribosomal protein S5 domain 2-like	Ribosomal protein S5 domain 2-like
e2nn6D1	D:147-235	Ribonuclease PH domain 2-like	Ribonuclease PH domain 2	Ribonuclease PH domain 2
e2nn6E2	E:5-191	Ribosomal protein S5 domain 2-like	Ribosomal protein S5 domain 2-like	Ribosomal protein S5 domain 2-like
e2nn6E1	E:192-285	Ribonuclease PH domain 2-like	Ribonuclease PH domain 2	Ribonuclease PH domain 2
e2nn6F2	F:29-72,F:92-175	Ribosomal protein S5 domain 2-like	Ribosomal protein S5 domain 2-like	Ribosomal protein S5 domain 2-like
e2nn6F1	F:176-270	Ribonuclease PH domain 2-like	Ribonuclease PH domain 2	Ribonuclease PH domain 2
e2nn6G3	G:16-50,G:74-106	alpha/beta-Hammerhead/Barrel-sandwich hybrid	alpha/beta-Hammerhead/Barrel-sandwich hybrid	Ribosomal L27 protein
e2nn6G1	G:107-193	OB-fold	Nucleic acid-binding proteins	Nucleic acid-binding proteins
e2nn6G2	G:195-274	Alpha-lytic protease prodomain-like	KH-domains	Eukaryotic type KH-domain (KH-domain type I)
e2nn6H3	H:25-72	alpha/beta-Hammerhead/Barrel-sandwich hybrid	alpha/beta-Hammerhead/Barrel-sandwich hybrid	Ribosomal L27 protein
e2nn6H1	H:73-167	OB-fold	Nucleic acid-binding proteins	Nucleic acid-binding proteins
e2nn6H2	H:168-293	Alpha-lytic protease prodomain-like	KH-domains	Eukaryotic type KH-domain (KH-domain type I)
e2nn6I2	I:6-60	alpha/beta-Hammerhead/Barrel-sandwich hybrid	alpha/beta-Hammerhead/Barrel-sandwich hybrid	Ribosomal L27 protein
e2nn6I1	I:61-185	OB-fold	Nucleic acid-binding proteins	Nucleic acid-binding proteins

Structural contacts of domain e2nn6C2 of H-group "Ribosomal protein S5 domain 2-like":

The domain and its neighboring domains (both within the asymmetric unit and to crystallographic symmetry mates) are represented by spheres and linked by lines. Distances between the center of the domain and interfaces are shown for each contact.

Domain ID	Symmetry operator	H-group	Visualization
e2nn6D2	C:X,Y,Z->D:x,y,z	Ribosomal protein S5 domain 2-like	Interaction Interface Pymol
e2nn6D1	C:X,Y,Z->D:x,y,z	Ribonuclease PH domain 2	Interaction Interface Pymol
e2nn6F1	C:X,Y,Z->F:x,y,z	Ribonuclease PH domain 2	Interaction Interface Pymol
e2nn6F2	C:X,Y,Z->F:x,y,z	Ribosomal protein S5 domain 2-like	Interaction Interface Pymol
e2nn6I1	C:Y,X,-Z+1->I:x,y,z	Nucleic acid-binding proteins	Interaction Interface Pymol
e2nn6I1	C:X,Y,Z->I:x,y,z	Nucleic acid-binding proteins	Interaction Interface Pymol
e2nn6C2	C:x,y,z->C:Y,X,-Z+1	Ribosomal protein S5 domain 2-like	Interaction Interface Pymol
e2nn6C2	C:Y,X,-Z+1->C:x,y,z	Ribosomal protein S5 domain 2-like	Interaction Interface Pymol