Domain ID e2qbdE2

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  • A: a+b two layers
  • X: Ribosomal protein S5 domain 2-like
  • H: Ribosomal protein S5 domain 2-like
  • T: Ribosomal protein S5 domain 2-like
  • F: Ribosomal_S5_C
UID: 000071162
Type: Automatic domain
Parent: e1pkpA2
Range: E:78-147
Ligands: MG
PDB: 2qbd
PDB Description:
Species:

Structure of domain e2qbdE2

Domains in the same chain:

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e2qbdE1 E:9-76 dsRBD-like dsRNA-binding domain-like dsRNA-binding domain-like
e2qbdE2 E:78-147 Ribosomal protein S5 domain 2-like Ribosomal protein S5 domain 2-like Ribosomal protein S5 domain 2-like

Domains in the same PDB:

e2qbdC2 C:1-105 Alpha-lytic protease prodomain-like KH-domains Prokaryotic type KH domain (KH-domain type II)
e2qbdC1 C:106-206 T-fold Ribosomal protein S3-C Ribosomal protein S3-C
e2qbdE1 E:9-76 dsRBD-like dsRNA-binding domain-like dsRNA-binding domain-like
e2qbdE2 E:78-147 Ribosomal protein S5 domain 2-like Ribosomal protein S5 domain 2-like Ribosomal protein S5 domain 2-like
e2qbdF1 F:1-100 Alpha-beta plaits Ribosomal protein S6 Ribosomal protein S6
e2qbdG1 G:11-146 Ribosomal protein S7 Ribosomal protein S7 Ribosomal protein S7
e2qbdH1 H:1-65 R3H domain-like Ribosomal protein S8, N-terminal domain Ribosomal protein S8, N-terminal domain
e2qbdH2 H:66-129 Ribosomal protein S8, C-terminal domain Ribosomal protein S8, C-terminal domain Ribosomal protein S8, C-terminal domain
e2qbdJ1 J:5-102 Alpha-beta plaits Ribosomal protein S10 Ribosomal protein S10
e2qbdK1 K:12-128 Ribonuclease H-like Ribonuclease H-like Ribonuclease H-like
e2qbdL1 L:1-118 OB-fold Nucleic acid-binding proteins Nucleic acid-binding proteins
e2qbdN1 N:1-100 Glucocorticoid receptor-like LIM domain-like LIM domain-like
e2qbdO1 O:2-89 S15/NS1 RNA-binding domain S15/NS1 RNA-binding domain S15/NS1 RNA-binding domain
e2qbdP1 P:1-78 Ribosomal protein S16 Ribosomal protein S16 Ribosomal protein S16
e2qbdR1 R:19-73 HTH HTH tri-helical
e2qbdT1 T:4-86 Spectrin repeat-like Ribosomal protein S20 Ribosomal protein S20

Structural contacts of domain e2qbdE2 of H-group "Ribosomal protein S5 domain 2-like":

The domain and its neighboring domains (both within the asymmetric unit and to crystallographic symmetry mates) are represented by spheres and linked by lines. Distances between the center of the domain and interfaces are shown for each contact.

Domain IDSymmetry operatorH-groupVisualization
e2qbdH2 E:X,Y,Z->H:x,y,z Ribosomal protein S8, C-terminal domain Interaction Interface Pymol