ECOD: domain e2qbdR1

Domain ID e2qbdR1

A: alpha arrays
X: HTH
H: HTH
T: tri-helical
F: Ribosomal_S18

UID:	000045086
Type:	Automatic domain
Parent:	e2uubR1
Range:	R:19-73
PDB:	2qbd
PDB Description:
Species:

Domain
In chain context
In PDB context

Structure of domain e2qbdR1

Domains in the same chain:

Download Pymol

e2qbdR1	R:19-73	HTH	HTH	tri-helical

Domains in the same PDB:

e2qbdC2	C:1-105	Alpha-lytic protease prodomain-like	KH-domains	Prokaryotic type KH domain (KH-domain type II)
e2qbdC1	C:106-206	T-fold	Ribosomal protein S3-C	Ribosomal protein S3-C
e2qbdE1	E:9-76	dsRBD-like	dsRNA-binding domain-like	dsRNA-binding domain-like
e2qbdE2	E:78-147	Ribosomal protein S5 domain 2-like	Ribosomal protein S5 domain 2-like	Ribosomal protein S5 domain 2-like
e2qbdF1	F:1-100	Alpha-beta plaits	Ribosomal protein S6	Ribosomal protein S6
e2qbdG1	G:11-146	Ribosomal protein S7	Ribosomal protein S7	Ribosomal protein S7
e2qbdH1	H:1-65	R3H domain-like	Ribosomal protein S8, N-terminal domain	Ribosomal protein S8, N-terminal domain
e2qbdH2	H:66-129	Ribosomal protein S8, C-terminal domain	Ribosomal protein S8, C-terminal domain	Ribosomal protein S8, C-terminal domain
e2qbdJ1	J:5-102	Alpha-beta plaits	Ribosomal protein S10	Ribosomal protein S10
e2qbdK1	K:12-128	Ribonuclease H-like	Ribonuclease H-like	Ribonuclease H-like
e2qbdL1	L:1-118	OB-fold	Nucleic acid-binding proteins	Nucleic acid-binding proteins
e2qbdN1	N:1-100	Glucocorticoid receptor-like	LIM domain-like	LIM domain-like
e2qbdO1	O:2-89	S15/NS1 RNA-binding domain	S15/NS1 RNA-binding domain	S15/NS1 RNA-binding domain
e2qbdP1	P:1-78	Ribosomal protein S16	Ribosomal protein S16	Ribosomal protein S16
e2qbdR1	R:19-73	HTH	HTH	tri-helical
e2qbdT1	T:4-86	Spectrin repeat-like	Ribosomal protein S20	Ribosomal protein S20

Structural contacts of domain e2qbdR1 of H-group "HTH":

The domain and its neighboring domains (both within the asymmetric unit and to crystallographic symmetry mates) are represented by spheres and linked by lines. Distances between the center of the domain and interfaces are shown for each contact.

Domain ID	Symmetry operator	H-group	Visualization
e2qbdF1	R:x,y,z->F:X,Y,Z	Ribosomal protein S6	Interaction Interface Pymol
e2qbdK1	R:x,y,z->K:X,Y,Z	Ribonuclease H-like	Interaction Interface Pymol