Domain ID e2uxbE1

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  • A: a+b two layers
  • X: dsRBD-like
  • H: dsRNA-binding domain-like
  • T: dsRNA-binding domain-like
  • F: Ribosomal_S5
UID: 000324585
Type: Automatic domain
Parent: e1pkpA1
Range: E:5-73
Ligands: MG
PDB: 2uxb
PDB Description: RIBOSOMAL PROTEIN S5
UniProt: Q5SHQ5
Species:

Structure of domain e2uxbE1

Domains in the same chain:

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e2uxbE1 E:5-73 dsRBD-like dsRNA-binding domain-like dsRNA-binding domain-like
e2uxbE2 E:74-155 Ribosomal protein S5 domain 2-like Ribosomal protein S5 domain 2-like Ribosomal protein S5 domain 2-like

Domains in the same PDB:

e2uxbB1 B:7-127,B:157-241 Flavodoxin-like Ribosomal protein S2/SIS domain Ribosomal protein S2/SIS domain
e2uxbC2 C:2-106 Alpha-lytic protease prodomain-like KH-domains Prokaryotic type KH domain (KH-domain type II)
e2uxbC1 C:107-208 T-fold Ribosomal protein S3-C Ribosomal protein S3-C
e2uxbD1 D:2-209 beta-Grasp Ubiquitin-related Alpha-L RNA-binding motif
e2uxbE1 E:5-73 dsRBD-like dsRNA-binding domain-like dsRNA-binding domain-like
e2uxbE2 E:74-155 Ribosomal protein S5 domain 2-like Ribosomal protein S5 domain 2-like Ribosomal protein S5 domain 2-like
e2uxbF1 F:1-97 Alpha-beta plaits Ribosomal protein S6 Ribosomal protein S6
e2uxbG1 G:12-156 Ribosomal protein S7 Ribosomal protein S7 Ribosomal protein S7
e2uxbH1 H:1-66 R3H domain-like Ribosomal protein S8, N-terminal domain Ribosomal protein S8, N-terminal domain
e2uxbH2 H:67-137 Ribosomal protein S8, C-terminal domain Ribosomal protein S8, C-terminal domain Ribosomal protein S8, C-terminal domain
e2uxbI1 I:2-128 Ribosomal protein S5 domain 2-like Ribosomal protein S5 domain 2-like Ribosomal protein S5 domain 2-like
e2uxbJ1 J:3-100 Alpha-beta plaits Ribosomal protein S10 Ribosomal protein S10
e2uxbK1 K:11-126 Ribonuclease H-like Ribonuclease H-like Ribonuclease H-like
e2uxbL1 L:5-129 OB-fold Nucleic acid-binding proteins Nucleic acid-binding proteins
e2uxbM1 M:2-126 HhH/H2TH H2TH H2TH
e2uxbN1 N:2-61 Glucocorticoid receptor-like LIM domain-like LIM domain-like
e2uxbO1 O:2-89 S15/NS1 RNA-binding domain S15/NS1 RNA-binding domain S15/NS1 RNA-binding domain
e2uxbP1 P:1-84 Ribosomal protein S16 Ribosomal protein S16 Ribosomal protein S16
e2uxbQ1 Q:2-105 OB-fold Nucleic acid-binding proteins Nucleic acid-binding proteins
e2uxbR1 R:19-88 HTH HTH tri-helical
e2uxbS1 S:2-82 Ribosomal protein S19 Ribosomal protein S19 Ribosomal protein S19
e2uxbT1 T:8-106 Spectrin repeat-like Ribosomal protein S20 Ribosomal protein S20

Structural contacts of domain e2uxbE1 of H-group "dsRNA-binding domain-like":

The domain and its neighboring domains (both within the asymmetric unit and to crystallographic symmetry mates) are represented by spheres and linked by lines. Distances between the center of the domain and interfaces are shown for each contact.

Domain IDSymmetry operatorH-groupVisualization
e2uxbD1 E:x,y,z->D:X,Y,Z Ubiquitin-related Interaction Interface Pymol
e2uxbE2 E:x,y,z->E:Y,X,-Z Ribosomal protein S5 domain 2-like Interaction Interface Pymol
e2uxbE2 E:Y,X,-Z->E:x,y,z Ribosomal protein S5 domain 2-like Interaction Interface Pymol
e2uxbC1 E:x,y,z->C:X,Y,Z Ribosomal protein S3-C Interaction Interface Pymol