Domain ID e2uxdE2

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  • A: a+b two layers
  • X: Ribosomal protein S5 domain 2-like
  • H: Ribosomal protein S5 domain 2-like
  • T: Ribosomal protein S5 domain 2-like
  • F: Ribosomal_S5_C
UID: 000328994
Type: Automatic domain
Parent: e1pkpA2
Range: E:74-155
PDB: 2uxd
PDB Description: RIBOSOMAL PROTEIN S5
UniProt: Q5SHQ5
Species:

Structure of domain e2uxdE2

Domains in the same chain:

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e2uxdE1 E:5-73 dsRBD-like dsRNA-binding domain-like dsRNA-binding domain-like
e2uxdE2 E:74-155 Ribosomal protein S5 domain 2-like Ribosomal protein S5 domain 2-like Ribosomal protein S5 domain 2-like

Domains in the same PDB:

e2uxdB1 B:7-127,B:157-241 Flavodoxin-like Ribosomal protein S2/SIS domain Ribosomal protein S2/SIS domain
e2uxdC2 C:2-106 Alpha-lytic protease prodomain-like KH-domains Prokaryotic type KH domain (KH-domain type II)
e2uxdC1 C:107-208 T-fold Ribosomal protein S3-C Ribosomal protein S3-C
e2uxdD1 D:2-209 beta-Grasp Ubiquitin-related Alpha-L RNA-binding motif
e2uxdE1 E:5-73 dsRBD-like dsRNA-binding domain-like dsRNA-binding domain-like
e2uxdE2 E:74-155 Ribosomal protein S5 domain 2-like Ribosomal protein S5 domain 2-like Ribosomal protein S5 domain 2-like
e2uxdF1 F:1-97 Alpha-beta plaits Ribosomal protein S6 Ribosomal protein S6
e2uxdG1 G:12-156 Ribosomal protein S7 Ribosomal protein S7 Ribosomal protein S7
e2uxdH1 H:1-66 R3H domain-like Ribosomal protein S8, N-terminal domain Ribosomal protein S8, N-terminal domain
e2uxdH2 H:67-137 Ribosomal protein S8, C-terminal domain Ribosomal protein S8, C-terminal domain Ribosomal protein S8, C-terminal domain
e2uxdI1 I:2-128 Ribosomal protein S5 domain 2-like Ribosomal protein S5 domain 2-like Ribosomal protein S5 domain 2-like
e2uxdJ1 J:3-100 Alpha-beta plaits Ribosomal protein S10 Ribosomal protein S10
e2uxdK1 K:11-126 Ribonuclease H-like Ribonuclease H-like Ribonuclease H-like
e2uxdL1 L:5-129 OB-fold Nucleic acid-binding proteins Nucleic acid-binding proteins
e2uxdM1 M:2-126 HhH/H2TH H2TH H2TH
e2uxdN1 N:2-61 Glucocorticoid receptor-like LIM domain-like LIM domain-like
e2uxdO1 O:2-89 S15/NS1 RNA-binding domain S15/NS1 RNA-binding domain S15/NS1 RNA-binding domain
e2uxdP1 P:1-84 Ribosomal protein S16 Ribosomal protein S16 Ribosomal protein S16
e2uxdQ1 Q:2-105 OB-fold Nucleic acid-binding proteins Nucleic acid-binding proteins
e2uxdR1 R:19-88 HTH HTH tri-helical
e2uxdS1 S:2-82 Ribosomal protein S19 Ribosomal protein S19 Ribosomal protein S19
e2uxdT1 T:8-106 Spectrin repeat-like Ribosomal protein S20 Ribosomal protein S20

Structural contacts of domain e2uxdE2 of H-group "Ribosomal protein S5 domain 2-like":

The domain and its neighboring domains (both within the asymmetric unit and to crystallographic symmetry mates) are represented by spheres and linked by lines. Distances between the center of the domain and interfaces are shown for each contact.

Domain IDSymmetry operatorH-groupVisualization
e2uxdH2 E:X,Y,Z->H:x,y,z Ribosomal protein S8, C-terminal domain Interaction Interface Pymol
e2uxdH1 E:X,Y,Z->H:x,y,z Ribosomal protein S8, N-terminal domain Interaction Interface Pymol
e2uxdD1 E:x,y,z->D:X,Y,Z Ubiquitin-related Interaction Interface Pymol
e2uxdE1 E:x,y,z->E:Y,X,-Z dsRNA-binding domain-like Interaction Interface Pymol
e2uxdE1 E:Y,X,-Z->E:x,y,z dsRNA-binding domain-like Interaction Interface Pymol