ECOD: domain e2vbiD3

Domain ID e2vbiD3

A: a/b three-layered sandwiches
X: Thiamin diphosphate-binding fold (THDP-binding)
H: Thiamin diphosphate-binding fold (THDP-binding)
T: Thiamin diphosphate-binding fold (THDP-binding)
F: TPP_enzyme_C

UID:	000339543
Type:	Automatic domain
Parent:	e1pvdA3
Range:	D:354-555
Ligands:	MG TPP
PDB:	2vbi
PDB Description:	PYRUVATE DECARBOXYLASE
UniProt:	Q8L388
Hsap BLAST neighbor:	Q9UJ83
Species:	Acetobacter pasteurianus

Domain
In chain context
In PDB context

Structure of domain e2vbiD3

Domains in the same chain:

Download Pymol

e2vbiD2	D:2-184	Thiamin diphosphate-binding fold (THDP-binding)	Thiamin diphosphate-binding fold (THDP-binding)	Thiamin diphosphate-binding fold (THDP-binding)
e2vbiD1	D:185-353	Rossmann-like	Rossmann-related	DHS-like NAD/FAD-binding domain
e2vbiD3	D:354-555	Thiamin diphosphate-binding fold (THDP-binding)	Thiamin diphosphate-binding fold (THDP-binding)	Thiamin diphosphate-binding fold (THDP-binding)

Domains in the same PDB:

Structural contacts of domain e2vbiD3 of H-group "Thiamin diphosphate-binding fold (THDP-binding)":

The domain and its neighboring domains (both within the asymmetric unit and to crystallographic symmetry mates) are represented by spheres and linked by lines. Distances between the center of the domain and interfaces are shown for each contact.

Domain ID	Symmetry operator	H-group	Visualization
e2vbiC3	D:x,y,z->C:X,Y,Z	Thiamin diphosphate-binding fold (THDP-binding)	Interaction Interface Pymol
e2vbiC2	D:x,y,z->C:X,Y,Z	Thiamin diphosphate-binding fold (THDP-binding)	Interaction Interface Pymol
e2vbiF3	D:X-1/2,Y-1/2,Z->F:x,y,z	Thiamin diphosphate-binding fold (THDP-binding)	Interaction Interface Pymol
e2vbiG1	D:X,Y,Z->G:x,y,z	Rossmann-related	Interaction Interface Pymol
e2vbiE3	D:X-1/2,Y-1/2,Z->E:x,y,z	Thiamin diphosphate-binding fold (THDP-binding)	Interaction Interface Pymol

e2vbiA2	A:2-184	Thiamin diphosphate-binding fold (THDP-binding)	Thiamin diphosphate-binding fold (THDP-binding)	Thiamin diphosphate-binding fold (THDP-binding)
e2vbiA1	A:185-353	Rossmann-like	Rossmann-related	DHS-like NAD/FAD-binding domain
e2vbiA3	A:354-555	Thiamin diphosphate-binding fold (THDP-binding)	Thiamin diphosphate-binding fold (THDP-binding)	Thiamin diphosphate-binding fold (THDP-binding)
e2vbiB2	B:2-184	Thiamin diphosphate-binding fold (THDP-binding)	Thiamin diphosphate-binding fold (THDP-binding)	Thiamin diphosphate-binding fold (THDP-binding)
e2vbiB1	B:185-353	Rossmann-like	Rossmann-related	DHS-like NAD/FAD-binding domain
e2vbiB3	B:354-555	Thiamin diphosphate-binding fold (THDP-binding)	Thiamin diphosphate-binding fold (THDP-binding)	Thiamin diphosphate-binding fold (THDP-binding)
e2vbiC2	C:2-184	Thiamin diphosphate-binding fold (THDP-binding)	Thiamin diphosphate-binding fold (THDP-binding)	Thiamin diphosphate-binding fold (THDP-binding)
e2vbiC1	C:185-353	Rossmann-like	Rossmann-related	DHS-like NAD/FAD-binding domain
e2vbiC3	C:354-555	Thiamin diphosphate-binding fold (THDP-binding)	Thiamin diphosphate-binding fold (THDP-binding)	Thiamin diphosphate-binding fold (THDP-binding)
e2vbiD2	D:2-184	Thiamin diphosphate-binding fold (THDP-binding)	Thiamin diphosphate-binding fold (THDP-binding)	Thiamin diphosphate-binding fold (THDP-binding)
e2vbiD1	D:185-353	Rossmann-like	Rossmann-related	DHS-like NAD/FAD-binding domain
e2vbiD3	D:354-555	Thiamin diphosphate-binding fold (THDP-binding)	Thiamin diphosphate-binding fold (THDP-binding)	Thiamin diphosphate-binding fold (THDP-binding)
e2vbiE2	E:2-184	Thiamin diphosphate-binding fold (THDP-binding)	Thiamin diphosphate-binding fold (THDP-binding)	Thiamin diphosphate-binding fold (THDP-binding)
e2vbiE1	E:185-353	Rossmann-like	Rossmann-related	DHS-like NAD/FAD-binding domain
e2vbiE3	E:354-555	Thiamin diphosphate-binding fold (THDP-binding)	Thiamin diphosphate-binding fold (THDP-binding)	Thiamin diphosphate-binding fold (THDP-binding)
e2vbiF2	F:2-184	Thiamin diphosphate-binding fold (THDP-binding)	Thiamin diphosphate-binding fold (THDP-binding)	Thiamin diphosphate-binding fold (THDP-binding)
e2vbiF1	F:185-353	Rossmann-like	Rossmann-related	DHS-like NAD/FAD-binding domain
e2vbiF3	F:354-555	Thiamin diphosphate-binding fold (THDP-binding)	Thiamin diphosphate-binding fold (THDP-binding)	Thiamin diphosphate-binding fold (THDP-binding)
e2vbiG2	G:2-184	Thiamin diphosphate-binding fold (THDP-binding)	Thiamin diphosphate-binding fold (THDP-binding)	Thiamin diphosphate-binding fold (THDP-binding)
e2vbiG1	G:185-353	Rossmann-like	Rossmann-related	DHS-like NAD/FAD-binding domain
e2vbiG3	G:354-555	Thiamin diphosphate-binding fold (THDP-binding)	Thiamin diphosphate-binding fold (THDP-binding)	Thiamin diphosphate-binding fold (THDP-binding)
e2vbiH2	H:2-184	Thiamin diphosphate-binding fold (THDP-binding)	Thiamin diphosphate-binding fold (THDP-binding)	Thiamin diphosphate-binding fold (THDP-binding)
e2vbiH1	H:185-353	Rossmann-like	Rossmann-related	DHS-like NAD/FAD-binding domain
e2vbiH3	H:354-555	Thiamin diphosphate-binding fold (THDP-binding)	Thiamin diphosphate-binding fold (THDP-binding)	Thiamin diphosphate-binding fold (THDP-binding)