Domain ID e2vdhH2

Download files:
  • A: a/b barrels
  • X: TIM beta/alpha-barrel
  • H: TIM barrels
  • T: TIM barrels
  • F: RuBisCO_large
UID: 000351796
Type: Automatic domain
Parent: e5rubA2
Range: H:151-475
Ligands: CAP EDO MG
PDB: 2vdh
PDB Description: RIBULOSE BISPHOSPHATE CARBOXYLASE LARGE CHAIN
UniProt: P00877
Species: Chlamydomonas reinhardtii

Structure of domain e2vdhH2

Domains in the same chain:

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e2vdhH1 H:11-150 Alpha-beta plaits RuBisCO, large subunit, small (N-terminal) domain RuBisCO, large subunit, small (N-terminal) domain
e2vdhH2 H:151-475 TIM beta/alpha-barrel TIM barrels TIM barrels

Domains in the same PDB:

e2vdhA1 A:11-150 Alpha-beta plaits RuBisCO, large subunit, small (N-terminal) domain RuBisCO, large subunit, small (N-terminal) domain
e2vdhA2 A:151-475 TIM beta/alpha-barrel TIM barrels TIM barrels
e2vdhB1 B:8-150 Alpha-beta plaits RuBisCO, large subunit, small (N-terminal) domain RuBisCO, large subunit, small (N-terminal) domain
e2vdhB2 B:151-475 TIM beta/alpha-barrel TIM barrels TIM barrels
e2vdhC1 C:9-150 Alpha-beta plaits RuBisCO, large subunit, small (N-terminal) domain RuBisCO, large subunit, small (N-terminal) domain
e2vdhC2 C:151-475 TIM beta/alpha-barrel TIM barrels TIM barrels
e2vdhD1 D:11-150 Alpha-beta plaits RuBisCO, large subunit, small (N-terminal) domain RuBisCO, large subunit, small (N-terminal) domain
e2vdhD2 D:151-475 TIM beta/alpha-barrel TIM barrels TIM barrels
e2vdhE1 E:11-150 Alpha-beta plaits RuBisCO, large subunit, small (N-terminal) domain RuBisCO, large subunit, small (N-terminal) domain
e2vdhE2 E:151-475 TIM beta/alpha-barrel TIM barrels TIM barrels
e2vdhF1 F:9-150 Alpha-beta plaits RuBisCO, large subunit, small (N-terminal) domain RuBisCO, large subunit, small (N-terminal) domain
e2vdhF2 F:151-475 TIM beta/alpha-barrel TIM barrels TIM barrels
e2vdhG1 G:9-150 Alpha-beta plaits RuBisCO, large subunit, small (N-terminal) domain RuBisCO, large subunit, small (N-terminal) domain
e2vdhG2 G:151-475 TIM beta/alpha-barrel TIM barrels TIM barrels
e2vdhH1 H:11-150 Alpha-beta plaits RuBisCO, large subunit, small (N-terminal) domain RuBisCO, large subunit, small (N-terminal) domain
e2vdhH2 H:151-475 TIM beta/alpha-barrel TIM barrels TIM barrels
e2vdhI1 I:1-140 Reverse ferredoxin RuBisCO, small subunit RuBisCO, small subunit
e2vdhJ1 J:1-140 Reverse ferredoxin RuBisCO, small subunit RuBisCO, small subunit
e2vdhK1 K:1-140 Reverse ferredoxin RuBisCO, small subunit RuBisCO, small subunit
e2vdhL1 L:1-140 Reverse ferredoxin RuBisCO, small subunit RuBisCO, small subunit
e2vdhM1 M:1-140 Reverse ferredoxin RuBisCO, small subunit RuBisCO, small subunit
e2vdhN1 N:1-140 Reverse ferredoxin RuBisCO, small subunit RuBisCO, small subunit
e2vdhO1 O:1-140 Reverse ferredoxin RuBisCO, small subunit RuBisCO, small subunit
e2vdhP1 P:1-140 Reverse ferredoxin RuBisCO, small subunit RuBisCO, small subunit

Structural contacts of domain e2vdhH2 of H-group "TIM barrels":

The domain and its neighboring domains (both within the asymmetric unit and to crystallographic symmetry mates) are represented by spheres and linked by lines. Distances between the center of the domain and interfaces are shown for each contact.

Domain IDSymmetry operatorH-groupVisualization
e2vdhG2 H:x,y,z->G:X,Y,Z TIM barrels Interaction Interface Pymol
e2vdhG1 H:x,y,z->G:X,Y,Z RuBisCO, large subunit, small (N-terminal) domain Interaction Interface Pymol
e2vdhP1 H:X,Y,Z->P:x,y,z RuBisCO, small subunit Interaction Interface Pymol
e2vdhJ1 H:X,Y,Z->J:x,y,z RuBisCO, small subunit Interaction Interface Pymol
e2vdhE1 H:x,y,z->E:X,Y,Z RuBisCO, large subunit, small (N-terminal) domain Interaction Interface Pymol
e2vdhF2 H:x,y,z->F:X,Y,Z TIM barrels Interaction Interface Pymol
e2vdhB2 H:x,y,z->B:X,Y,Z TIM barrels Interaction Interface Pymol
e2vdhB1 H:x,y,z->B:X,Y,Z RuBisCO, large subunit, small (N-terminal) domain Interaction Interface Pymol
e2vdhL1 H:-X,Y-1/2,-Z->L:x,y,z RuBisCO, small subunit Interaction Interface Pymol