Domain ID e2vmfB1

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  • A: beta sandwiches
  • X: jelly-roll
  • H: Galactose-binding domain-like
  • T: Galactose-binding domain-like
  • F: Glyco_hydro_2_N2
UID: 000030556
Type: Automatic domain
Parent: e2je8A1
Range: B:28-219
Ligands: BR CL EDO MVL
PDB: 2vmf
PDB Description: BETA-MANNOSIDASE
UniProt: Q8AAK6
Hsap BLAST neighbor: O00462
Species:

Structure of domain e2vmfB1

Domains in the same chain:

Download Pymol

e2vmfB1 B:28-219 jelly-roll Galactose-binding domain-like Galactose-binding domain-like
e2vmfB2 B:220-330 Immunoglobulin-like beta-sandwich Immunoglobulin-related Immunoglobulin/Fibronectin type III/E set domains/PapD-like
e2vmfB5 B:331-678 TIM beta/alpha-barrel TIM barrels TIM barrels
e2vmfB4 B:679-783 Immunoglobulin-like beta-sandwich Immunoglobulin-related Immunoglobulin/Fibronectin type III/E set domains/PapD-like
e2vmfB3 B:784-864 Immunoglobulin-like beta-sandwich Immunoglobulin-related Immunoglobulin/Fibronectin type III/E set domains/PapD-like

Domains in the same PDB:

e2vmfA1 A:28-219 jelly-roll Galactose-binding domain-like Galactose-binding domain-like
e2vmfA2 A:220-330 Immunoglobulin-like beta-sandwich Immunoglobulin-related Immunoglobulin/Fibronectin type III/E set domains/PapD-like
e2vmfA5 A:331-678 TIM beta/alpha-barrel TIM barrels TIM barrels
e2vmfA4 A:679-783 Immunoglobulin-like beta-sandwich Immunoglobulin-related Immunoglobulin/Fibronectin type III/E set domains/PapD-like
e2vmfA3 A:784-864 Immunoglobulin-like beta-sandwich Immunoglobulin-related Immunoglobulin/Fibronectin type III/E set domains/PapD-like
e2vmfB1 B:28-219 jelly-roll Galactose-binding domain-like Galactose-binding domain-like
e2vmfB2 B:220-330 Immunoglobulin-like beta-sandwich Immunoglobulin-related Immunoglobulin/Fibronectin type III/E set domains/PapD-like
e2vmfB5 B:331-678 TIM beta/alpha-barrel TIM barrels TIM barrels
e2vmfB4 B:679-783 Immunoglobulin-like beta-sandwich Immunoglobulin-related Immunoglobulin/Fibronectin type III/E set domains/PapD-like
e2vmfB3 B:784-864 Immunoglobulin-like beta-sandwich Immunoglobulin-related Immunoglobulin/Fibronectin type III/E set domains/PapD-like

Structural contacts of domain e2vmfB1 of H-group "Galactose-binding domain-like":

The domain and its neighboring domains (both within the asymmetric unit and to crystallographic symmetry mates) are represented by spheres and linked by lines. Distances between the center of the domain and interfaces are shown for each contact.

Domain IDSymmetry operatorH-groupVisualization
e2vmfA1 B:x,y,z->A:X-1,Y,Z Galactose-binding domain-like Interaction Interface Pymol
e2vmfA5 B:x,y,z->A:X-1,Y,Z TIM barrels Interaction Interface Pymol
e2vmfA3 B:x,y,z->A:X,Y,Z Immunoglobulin-related Interaction Interface Pymol
e2vmfA4 B:x,y,z->A:X,Y,Z Immunoglobulin-related Interaction Interface Pymol