Domain ID e2vqeE1

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  • A: a+b two layers
  • X: dsRBD-like
  • H: dsRNA-binding domain-like
  • T: dsRNA-binding domain-like
  • F: Ribosomal_S5
UID: 000341016
Type: Automatic domain
Parent: e1pkpA1
Range: E:5-73
Ligands: K
PDB: 2vqe
PDB Description: 30S RIBOSOMAL PROTEIN S5
UniProt: Q5SHQ5
Species:

Structure of domain e2vqeE1

Domains in the same chain:

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e2vqeE1 E:5-73 dsRBD-like dsRNA-binding domain-like dsRNA-binding domain-like
e2vqeE2 E:74-155 Ribosomal protein S5 domain 2-like Ribosomal protein S5 domain 2-like Ribosomal protein S5 domain 2-like

Domains in the same PDB:

e2vqeB1 B:6-127,B:157-241 Flavodoxin-like Ribosomal protein S2/SIS domain Ribosomal protein S2/SIS domain
e2vqeC2 C:2-106 Alpha-lytic protease prodomain-like KH-domains Prokaryotic type KH domain (KH-domain type II)
e2vqeC1 C:107-208 T-fold Ribosomal protein S3-C Ribosomal protein S3-C
e2vqeD1 D:2-209 beta-Grasp Ubiquitin-related Alpha-L RNA-binding motif
e2vqeE1 E:5-73 dsRBD-like dsRNA-binding domain-like dsRNA-binding domain-like
e2vqeE2 E:74-155 Ribosomal protein S5 domain 2-like Ribosomal protein S5 domain 2-like Ribosomal protein S5 domain 2-like
e2vqeF1 F:1-97 Alpha-beta plaits Ribosomal protein S6 Ribosomal protein S6
e2vqeG1 G:12-156 Ribosomal protein S7 Ribosomal protein S7 Ribosomal protein S7
e2vqeH1 H:1-66 R3H domain-like Ribosomal protein S8, N-terminal domain Ribosomal protein S8, N-terminal domain
e2vqeH2 H:67-137 Ribosomal protein S8, C-terminal domain Ribosomal protein S8, C-terminal domain Ribosomal protein S8, C-terminal domain
e2vqeI1 I:2-128 Ribosomal protein S5 domain 2-like Ribosomal protein S5 domain 2-like Ribosomal protein S5 domain 2-like
e2vqeJ1 J:3-100 Alpha-beta plaits Ribosomal protein S10 Ribosomal protein S10
e2vqeK1 K:11-126 Ribonuclease H-like Ribonuclease H-like Ribonuclease H-like
e2vqeL1 L:5-129 OB-fold Nucleic acid-binding proteins Nucleic acid-binding proteins
e2vqeM1 M:2-126 HhH/H2TH H2TH H2TH
e2vqeN1 N:2-61 Glucocorticoid receptor-like LIM domain-like LIM domain-like
e2vqeO1 O:2-89 S15/NS1 RNA-binding domain S15/NS1 RNA-binding domain S15/NS1 RNA-binding domain
e2vqeP1 P:1-84 Ribosomal protein S16 Ribosomal protein S16 Ribosomal protein S16
e2vqeQ1 Q:2-105 OB-fold Nucleic acid-binding proteins Nucleic acid-binding proteins
e2vqeR1 R:19-88 HTH HTH tri-helical
e2vqeS1 S:2-82 Ribosomal protein S19 Ribosomal protein S19 Ribosomal protein S19
e2vqeT1 T:8-106 Spectrin repeat-like Ribosomal protein S20 Ribosomal protein S20

Structural contacts of domain e2vqeE1 of H-group "dsRNA-binding domain-like":

The domain and its neighboring domains (both within the asymmetric unit and to crystallographic symmetry mates) are represented by spheres and linked by lines. Distances between the center of the domain and interfaces are shown for each contact.

Domain IDSymmetry operatorH-groupVisualization
e2vqeD1 E:x,y,z->D:X,Y,Z Ubiquitin-related Interaction Interface Pymol
e2vqeE2 E:x,y,z->E:Y,X,-Z Ribosomal protein S5 domain 2-like Interaction Interface Pymol
e2vqeE2 E:Y,X,-Z->E:x,y,z Ribosomal protein S5 domain 2-like Interaction Interface Pymol
e2vqeC1 E:x,y,z->C:X,Y,Z Ribosomal protein S3-C Interaction Interface Pymol