ECOD: domain e2wb1Y3

Domain ID e2wb1Y3

A: a+b complex topology
X: helical domain in yeast RNA-polymerases
H: third helical domain in yeast RNA-polymerase II beta-prime subunit
T: third helical domain in yeast RNA-polymerase II beta-prime subunit
F: Unmapped domains

UID:	001853813
Type:	Automatic domain
Parent:	e3hkzC1
Range:	Y:11-65
PDB:	2wb1
PDB Description:	DNA-DIRECTED RNA POLYMERASE RPO1C SUBUNIT
Species:	Sulfolobus shibatae

Domains in the same chain:

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e2wb1Y3	Y:11-65	helical domain in yeast RNA-polymerases	third helical domain in yeast RNA-polymerase II beta-prime subunit	third helical domain in yeast RNA-polymerase II beta-prime subunit
e2wb1Y1	Y:66-115,Y:276-394	central helical domain in RNA-polymerase beta-prime subunit	central helical domain in RNA-polymerase beta-prime subunit	central helical domain in RNA-polymerase beta-prime subunit
e2wb1Y2	Y:116-147,Y:233-275	ferredoxin-like domain in yeast RNA-polymerase beta-prime subunit	ferredoxin-like domain in yeast RNA-polymerase beta-prime subunit	ferredoxin-like domain in yeast RNA-polymerase beta-prime subunit
e2wb1Y4	Y:148-232	permuted ferredoxin-like domain in yeast RNA-polymerase beta-prime subunit	permuted ferredoxin-like domain in yeast RNA-polymerase beta-prime subunit	permuted ferredoxin-like domain in yeast RNA-polymerase beta-prime subunit

Domains in the same PDB:

Structural contacts of domain e2wb1Y3 of H-group "third helical domain in yeast RNA-polymerase II beta-prime subunit":

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The domain and its neighboring domains (both within the asymmetric unit and to crystallographic symmetry mates) are represented by spheres and linked by lines. Distances between the center of the domain and interfaces are shown for each contact.

Domain ID	Symmetry operator	H-group	Visualization
e2wb1W1	Y:x,y,z->W:X,Y,Z	second helical domain in RNA-polymerase beta-prime subunit	Interaction Interface Pymol
e2wb1Z1	Y:X,Y,Z->Z:x,y,z	RPB5-like RNA polymerase subunit	Interaction Interface Pymol
e2wb1I1	Y:X,Y,Z->I:x,y,z	RPB6/omega subunit-like	Interaction Interface Pymol
e2wb1R4	Y:x,y,z->R:-X+1,Y-1/2,-Z+1/2	N-terminal domain in beta subunit of DNA dependent RNA-polymerase	Interaction Interface Pymol
e2wb1C3	Y:x,y,z->C:X,Y,Z	ferredoxin-like domain in yeast RNA-polymerase beta-prime subunit	Interaction Interface Pymol

e2wb1A2	A:4-306	N-terminal domain in RNA-polymerase beta-prime subunit	N-terminal domain in RNA-polymerase beta-prime subunit	N-terminal domain in RNA-polymerase beta-prime subunit
e2wb1A4	A:307-494	cradle loop barrel	RIFT-related	double psi
e2wb1A3	A:495-644	first helical domain in RNA-polymerase beta-prime subunit	first helical domain in RNA-polymerase beta-prime subunit	first helical domain in RNA-polymerase beta-prime subunit
e2wb1A1	A:645-879	second helical domain in RNA-polymerase beta-prime subunit	second helical domain in RNA-polymerase beta-prime subunit	second helical domain in RNA-polymerase beta-prime subunit
e2wb1B6	B:8-170,B:345-475	N-terminal domain in beta subunit of DNA dependent RNA-polymerase	N-terminal domain in beta subunit of DNA dependent RNA-polymerase	N-terminal domain in beta subunit of DNA dependent RNA-polymerase
e2wb1B5	B:171-344	insertion domain in beta subunit of DNA dependent RNA-polymerase	insertion domain in beta subunit of DNA dependent RNA-polymerase	insertion domain in beta subunit of DNA dependent RNA-polymerase
e2wb1B4	B:476-575	inserted a+b domain in yeast RNA polymerase beta subunit	inserted a+b domain in yeast RNA polymerase beta subunit	inserted a+b domain in yeast RNA polymerase beta subunit
e2wb1B3	B:576-715	barrel domain in beta subunit of DNA dependent RNA-polymerase	barrel domain in beta subunit of DNA dependent RNA-polymerase	barrel domain in beta subunit of DNA dependent RNA-polymerase
e2wb1B7	B:716-752,B:876-998	cradle loop barrel	RIFT-related	double psi
e2wb1B2	B:753-875	alpha/beta-Hammerhead/Barrel-sandwich hybrid	alpha/beta-Hammerhead/Barrel-sandwich hybrid	Single hybrid motif
e2wb1B1	B:999-1122	C-terminal domain in beta subunit of DNA dependent RNA-polymerase	C-terminal domain in beta subunit of DNA dependent RNA-polymerase	C-terminal domain in beta subunit of DNA dependent RNA-polymerase
e2wb1C1	C:11-65	helical domain in yeast RNA-polymerases	third helical domain in yeast RNA-polymerase II beta-prime subunit	third helical domain in yeast RNA-polymerase II beta-prime subunit
e2wb1C4	C:66-115,C:276-394	central helical domain in RNA-polymerase beta-prime subunit	central helical domain in RNA-polymerase beta-prime subunit	central helical domain in RNA-polymerase beta-prime subunit
e2wb1C3	C:116-147,C:233-275	ferredoxin-like domain in yeast RNA-polymerase beta-prime subunit	ferredoxin-like domain in yeast RNA-polymerase beta-prime subunit	ferredoxin-like domain in yeast RNA-polymerase beta-prime subunit
e2wb1C2	C:148-232	permuted ferredoxin-like domain in yeast RNA-polymerase beta-prime subunit	permuted ferredoxin-like domain in yeast RNA-polymerase beta-prime subunit	permuted ferredoxin-like domain in yeast RNA-polymerase beta-prime subunit
e2wb1D2	D:2-36,D:159-264	DCoH-like	RBP11-like subunits of RNA polymerase	RBP11-like subunits of RNA polymerase
e2wb1D1	D:37-158	Ribosomal protein TL5/L25 C-terminal domain-like	Insert subdomain of RNA polymerase alpha subunit	Insert subdomain of RNA polymerase alpha subunit
e2wb1E2	E:1-78	Dodecin subunit-like	Flavin-binding protein dodecin-like	Flavin-binding protein dodecin-like
e2wb1E1	E:79-177	OB-fold	Nucleic acid-binding proteins	Nucleic acid-binding proteins
e2wb1F1	F:3-93	HhH/H2TH	SAM/DNA-glycosylase	SAM domain-like
e2wb1G1	G:5-117	OB-fold	Nucleic acid-binding proteins	Nucleic acid-binding proteins
e2wb1H1	H:9-82	RPB5-like RNA polymerase subunit	RPB5-like RNA polymerase subunit	RPB5-like RNA polymerase subunit
e2wb1I1	I:11-92	RPB6/omega subunit-like	RPB6/omega subunit-like	RPB6
e2wb1K1	K:11-92	RPB6/omega subunit-like	RPB6/omega subunit-like	RPB6
e2wb1L1	L:1-92	DCoH-like	RBP11-like subunits of RNA polymerase	RBP11-like subunits of RNA polymerase
e2wb1M1	M:1-92	DCoH-like	RBP11-like subunits of RNA polymerase	RBP11-like subunits of RNA polymerase
e2wb1N1	N:1-64	HTH	RPB10	RPB10
e2wb1O1	O:1-64	HTH	RPB10	RPB10
e2wb1P1	P:6-48	Rubredoxin-like	Rubredoxin-related	Rubredoxin-related
e2wb1Q1	Q:45-77	YqgQ-like	YqgQ-like	YqgQ-like
e2wb1R4	R:8-170,R:345-475	N-terminal domain in beta subunit of DNA dependent RNA-polymerase	N-terminal domain in beta subunit of DNA dependent RNA-polymerase	N-terminal domain in beta subunit of DNA dependent RNA-polymerase
e2wb1R3	R:171-344	insertion domain in beta subunit of DNA dependent RNA-polymerase	insertion domain in beta subunit of DNA dependent RNA-polymerase	insertion domain in beta subunit of DNA dependent RNA-polymerase
e2wb1R5	R:476-575	inserted a+b domain in yeast RNA polymerase beta subunit	inserted a+b domain in yeast RNA polymerase beta subunit	inserted a+b domain in yeast RNA polymerase beta subunit
e2wb1R6	R:576-715	barrel domain in beta subunit of DNA dependent RNA-polymerase	barrel domain in beta subunit of DNA dependent RNA-polymerase	barrel domain in beta subunit of DNA dependent RNA-polymerase
e2wb1R2	R:716-752,R:876-998	cradle loop barrel	RIFT-related	double psi
e2wb1R7	R:753-875	alpha/beta-Hammerhead/Barrel-sandwich hybrid	alpha/beta-Hammerhead/Barrel-sandwich hybrid	Single hybrid motif
e2wb1R1	R:999-1122	C-terminal domain in beta subunit of DNA dependent RNA-polymerase	C-terminal domain in beta subunit of DNA dependent RNA-polymerase	C-terminal domain in beta subunit of DNA dependent RNA-polymerase
e2wb1S2	S:2-36,S:159-264	DCoH-like	RBP11-like subunits of RNA polymerase	RBP11-like subunits of RNA polymerase
e2wb1S1	S:37-158	Ribosomal protein TL5/L25 C-terminal domain-like	Insert subdomain of RNA polymerase alpha subunit	Insert subdomain of RNA polymerase alpha subunit
e2wb1T2	T:1-78	Dodecin subunit-like	Flavin-binding protein dodecin-like	Flavin-binding protein dodecin-like
e2wb1T1	T:79-177	OB-fold	Nucleic acid-binding proteins	Nucleic acid-binding proteins
e2wb1U1	U:3-93	HhH/H2TH	SAM/DNA-glycosylase	SAM domain-like
e2wb1V1	V:5-117	OB-fold	Nucleic acid-binding proteins	Nucleic acid-binding proteins
e2wb1W3	W:4-306	N-terminal domain in RNA-polymerase beta-prime subunit	N-terminal domain in RNA-polymerase beta-prime subunit	N-terminal domain in RNA-polymerase beta-prime subunit
e2wb1W2	W:307-494	cradle loop barrel	RIFT-related	double psi
e2wb1W4	W:495-644	first helical domain in RNA-polymerase beta-prime subunit	first helical domain in RNA-polymerase beta-prime subunit	first helical domain in RNA-polymerase beta-prime subunit
e2wb1W1	W:645-879	second helical domain in RNA-polymerase beta-prime subunit	second helical domain in RNA-polymerase beta-prime subunit	second helical domain in RNA-polymerase beta-prime subunit
e2wb1X1	X:6-48	Rubredoxin-like	Rubredoxin-related	Rubredoxin-related
e2wb1Y3	Y:11-65	helical domain in yeast RNA-polymerases	third helical domain in yeast RNA-polymerase II beta-prime subunit	third helical domain in yeast RNA-polymerase II beta-prime subunit
e2wb1Y1	Y:66-115,Y:276-394	central helical domain in RNA-polymerase beta-prime subunit	central helical domain in RNA-polymerase beta-prime subunit	central helical domain in RNA-polymerase beta-prime subunit
e2wb1Y2	Y:116-147,Y:233-275	ferredoxin-like domain in yeast RNA-polymerase beta-prime subunit	ferredoxin-like domain in yeast RNA-polymerase beta-prime subunit	ferredoxin-like domain in yeast RNA-polymerase beta-prime subunit
e2wb1Y4	Y:148-232	permuted ferredoxin-like domain in yeast RNA-polymerase beta-prime subunit	permuted ferredoxin-like domain in yeast RNA-polymerase beta-prime subunit	permuted ferredoxin-like domain in yeast RNA-polymerase beta-prime subunit
e2wb1Z1	Z:9-82	RPB5-like RNA polymerase subunit	RPB5-like RNA polymerase subunit	RPB5-like RNA polymerase subunit