Domain ID e2wb1Z1

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  • A: a+b two layers
  • X: RPB5-like RNA polymerase subunit
  • H: RPB5-like RNA polymerase subunit
  • T: RPB5-like RNA polymerase subunit
  • F: RNA_pol_Rpb5_C
UID: 000363811
Type: Automatic domain
Parent: e1dzfA1
Range: Z:9-82
PDB: 2wb1
PDB Description: DNA-DIRECTED RNA POLYMERASE RPO5 SUBUNIT
UniProt: B8YB60
Hsap BLAST neighbor: P19388
Species: Sulfolobus shibatae

Structure of domain e2wb1Z1

Domains in the same chain:

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e2wb1Z1 Z:9-82 RPB5-like RNA polymerase subunit RPB5-like RNA polymerase subunit RPB5-like RNA polymerase subunit

Domains in the same PDB:

e2wb1A2 A:4-306 N-terminal domain in RNA-polymerase beta-prime subunit N-terminal domain in RNA-polymerase beta-prime subunit N-terminal domain in RNA-polymerase beta-prime subunit
e2wb1A4 A:307-494 cradle loop barrel RIFT-related double psi
e2wb1A3 A:495-644 first helical domain in RNA-polymerase beta-prime subunit first helical domain in RNA-polymerase beta-prime subunit first helical domain in RNA-polymerase beta-prime subunit
e2wb1A1 A:645-879 second helical domain in RNA-polymerase beta-prime subunit second helical domain in RNA-polymerase beta-prime subunit second helical domain in RNA-polymerase beta-prime subunit
e2wb1B6 B:8-170,B:345-475 N-terminal domain in beta subunit of DNA dependent RNA-polymerase N-terminal domain in beta subunit of DNA dependent RNA-polymerase N-terminal domain in beta subunit of DNA dependent RNA-polymerase
e2wb1B5 B:171-344 insertion domain in beta subunit of DNA dependent RNA-polymerase insertion domain in beta subunit of DNA dependent RNA-polymerase insertion domain in beta subunit of DNA dependent RNA-polymerase
e2wb1B4 B:476-575 inserted a+b domain in yeast RNA polymerase beta subunit inserted a+b domain in yeast RNA polymerase beta subunit inserted a+b domain in yeast RNA polymerase beta subunit
e2wb1B3 B:576-715 barrel domain in beta subunit of DNA dependent RNA-polymerase barrel domain in beta subunit of DNA dependent RNA-polymerase barrel domain in beta subunit of DNA dependent RNA-polymerase
e2wb1B7 B:716-752,B:876-998 cradle loop barrel RIFT-related double psi
e2wb1B2 B:753-875 alpha/beta-Hammerhead/Barrel-sandwich hybrid alpha/beta-Hammerhead/Barrel-sandwich hybrid Single hybrid motif
e2wb1B1 B:999-1122 C-terminal domain in beta subunit of DNA dependent RNA-polymerase C-terminal domain in beta subunit of DNA dependent RNA-polymerase C-terminal domain in beta subunit of DNA dependent RNA-polymerase
e2wb1C1 C:11-65 helical domain in yeast RNA-polymerases third helical domain in yeast RNA-polymerase II beta-prime subunit third helical domain in yeast RNA-polymerase II beta-prime subunit
e2wb1C4 C:66-115,C:276-394 central helical domain in RNA-polymerase beta-prime subunit central helical domain in RNA-polymerase beta-prime subunit central helical domain in RNA-polymerase beta-prime subunit
e2wb1C3 C:116-147,C:233-275 ferredoxin-like domain in yeast RNA-polymerase beta-prime subunit ferredoxin-like domain in yeast RNA-polymerase beta-prime subunit ferredoxin-like domain in yeast RNA-polymerase beta-prime subunit
e2wb1C2 C:148-232 permuted ferredoxin-like domain in yeast RNA-polymerase beta-prime subunit permuted ferredoxin-like domain in yeast RNA-polymerase beta-prime subunit permuted ferredoxin-like domain in yeast RNA-polymerase beta-prime subunit
e2wb1D2 D:2-36,D:159-264 DCoH-like RBP11-like subunits of RNA polymerase RBP11-like subunits of RNA polymerase
e2wb1D1 D:37-158 Ribosomal protein TL5/L25 C-terminal domain-like Insert subdomain of RNA polymerase alpha subunit Insert subdomain of RNA polymerase alpha subunit
e2wb1E2 E:1-78 Dodecin subunit-like Flavin-binding protein dodecin-like Flavin-binding protein dodecin-like
e2wb1E1 E:79-177 OB-fold Nucleic acid-binding proteins Nucleic acid-binding proteins
e2wb1F1 F:3-93 HhH/H2TH SAM/DNA-glycosylase SAM domain-like
e2wb1G1 G:5-117 OB-fold Nucleic acid-binding proteins Nucleic acid-binding proteins
e2wb1H1 H:9-82 RPB5-like RNA polymerase subunit RPB5-like RNA polymerase subunit RPB5-like RNA polymerase subunit
e2wb1I1 I:11-92 RPB6/omega subunit-like RPB6/omega subunit-like RPB6
e2wb1K1 K:11-92 RPB6/omega subunit-like RPB6/omega subunit-like RPB6
e2wb1L1 L:1-92 DCoH-like RBP11-like subunits of RNA polymerase RBP11-like subunits of RNA polymerase
e2wb1M1 M:1-92 DCoH-like RBP11-like subunits of RNA polymerase RBP11-like subunits of RNA polymerase
e2wb1N1 N:1-64 HTH RPB10 RPB10
e2wb1O1 O:1-64 HTH RPB10 RPB10
e2wb1P1 P:6-48 Rubredoxin-like Rubredoxin-related Rubredoxin-related
e2wb1Q1 Q:45-77 YqgQ-like YqgQ-like YqgQ-like
e2wb1R4 R:8-170,R:345-475 N-terminal domain in beta subunit of DNA dependent RNA-polymerase N-terminal domain in beta subunit of DNA dependent RNA-polymerase N-terminal domain in beta subunit of DNA dependent RNA-polymerase
e2wb1R3 R:171-344 insertion domain in beta subunit of DNA dependent RNA-polymerase insertion domain in beta subunit of DNA dependent RNA-polymerase insertion domain in beta subunit of DNA dependent RNA-polymerase
e2wb1R5 R:476-575 inserted a+b domain in yeast RNA polymerase beta subunit inserted a+b domain in yeast RNA polymerase beta subunit inserted a+b domain in yeast RNA polymerase beta subunit
e2wb1R6 R:576-715 barrel domain in beta subunit of DNA dependent RNA-polymerase barrel domain in beta subunit of DNA dependent RNA-polymerase barrel domain in beta subunit of DNA dependent RNA-polymerase
e2wb1R2 R:716-752,R:876-998 cradle loop barrel RIFT-related double psi
e2wb1R7 R:753-875 alpha/beta-Hammerhead/Barrel-sandwich hybrid alpha/beta-Hammerhead/Barrel-sandwich hybrid Single hybrid motif
e2wb1R1 R:999-1122 C-terminal domain in beta subunit of DNA dependent RNA-polymerase C-terminal domain in beta subunit of DNA dependent RNA-polymerase C-terminal domain in beta subunit of DNA dependent RNA-polymerase
e2wb1S2 S:2-36,S:159-264 DCoH-like RBP11-like subunits of RNA polymerase RBP11-like subunits of RNA polymerase
e2wb1S1 S:37-158 Ribosomal protein TL5/L25 C-terminal domain-like Insert subdomain of RNA polymerase alpha subunit Insert subdomain of RNA polymerase alpha subunit
e2wb1T2 T:1-78 Dodecin subunit-like Flavin-binding protein dodecin-like Flavin-binding protein dodecin-like
e2wb1T1 T:79-177 OB-fold Nucleic acid-binding proteins Nucleic acid-binding proteins
e2wb1U1 U:3-93 HhH/H2TH SAM/DNA-glycosylase SAM domain-like
e2wb1V1 V:5-117 OB-fold Nucleic acid-binding proteins Nucleic acid-binding proteins
e2wb1W3 W:4-306 N-terminal domain in RNA-polymerase beta-prime subunit N-terminal domain in RNA-polymerase beta-prime subunit N-terminal domain in RNA-polymerase beta-prime subunit
e2wb1W2 W:307-494 cradle loop barrel RIFT-related double psi
e2wb1W4 W:495-644 first helical domain in RNA-polymerase beta-prime subunit first helical domain in RNA-polymerase beta-prime subunit first helical domain in RNA-polymerase beta-prime subunit
e2wb1W1 W:645-879 second helical domain in RNA-polymerase beta-prime subunit second helical domain in RNA-polymerase beta-prime subunit second helical domain in RNA-polymerase beta-prime subunit
e2wb1X1 X:6-48 Rubredoxin-like Rubredoxin-related Rubredoxin-related
e2wb1Y3 Y:11-65 helical domain in yeast RNA-polymerases third helical domain in yeast RNA-polymerase II beta-prime subunit third helical domain in yeast RNA-polymerase II beta-prime subunit
e2wb1Y1 Y:66-115,Y:276-394 central helical domain in RNA-polymerase beta-prime subunit central helical domain in RNA-polymerase beta-prime subunit central helical domain in RNA-polymerase beta-prime subunit
e2wb1Y2 Y:116-147,Y:233-275 ferredoxin-like domain in yeast RNA-polymerase beta-prime subunit ferredoxin-like domain in yeast RNA-polymerase beta-prime subunit ferredoxin-like domain in yeast RNA-polymerase beta-prime subunit
e2wb1Y4 Y:148-232 permuted ferredoxin-like domain in yeast RNA-polymerase beta-prime subunit permuted ferredoxin-like domain in yeast RNA-polymerase beta-prime subunit permuted ferredoxin-like domain in yeast RNA-polymerase beta-prime subunit
e2wb1Z1 Z:9-82 RPB5-like RNA polymerase subunit RPB5-like RNA polymerase subunit RPB5-like RNA polymerase subunit

Structural contacts of domain e2wb1Z1 of H-group "RPB5-like RNA polymerase subunit":

The domain and its neighboring domains (both within the asymmetric unit and to crystallographic symmetry mates) are represented by spheres and linked by lines. Distances between the center of the domain and interfaces are shown for each contact.

Domain IDSymmetry operatorH-groupVisualization
e2wb1Y1 Z:x,y,z->Y:X,Y,Z central helical domain in RNA-polymerase beta-prime subunit Interaction Interface Pymol
e2wb1Y2 Z:x,y,z->Y:X,Y,Z ferredoxin-like domain in yeast RNA-polymerase beta-prime subunit Interaction Interface Pymol
e2wb1Y3 Z:x,y,z->Y:X,Y,Z third helical domain in yeast RNA-polymerase II beta-prime subunit Interaction Interface Pymol
e2wb1W1 Z:x,y,z->W:X,Y,Z second helical domain in RNA-polymerase beta-prime subunit Interaction Interface Pymol
e2wb1W3 Z:x,y,z->W:X,Y,Z N-terminal domain in RNA-polymerase beta-prime subunit Interaction Interface Pymol
e2wb1I1 Z:X,Y,Z->I:x,y,z RPB6/omega subunit-like Interaction Interface Pymol
e2wb1C3 Z:x,y,z->C:X,Y,Z ferredoxin-like domain in yeast RNA-polymerase beta-prime subunit Interaction Interface Pymol