Domain ID e3a2fA5

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  • A: mixed a+b and a/b
  • X: Ribonuclease H-like
  • H: Ribonuclease H-like
  • T: Ribonuclease H-like
  • F: DNA_pol_B_exo1
UID: 001710067
Type: Automatic domain
Parent: e1tgoA6
Range: A:134-347
PDB: 3a2f
PDB Description: DNA polymerase
UniProt: P61875
Hsap BLAST neighbor: P28340
Species: Pyrococcus furiosus

Structure of domain e3a2fA5

Domains in the same chain:

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e3a2fA3 A:1-34,A:115-133 OB-fold Nucleic acid-binding proteins Nucleic acid-binding proteins
e3a2fA4 A:35-114 Alpha-beta plaits Family B DNA polymerase insertion domain Family B DNA polymerase insertion domain
e3a2fA5 A:134-347 Ribonuclease H-like Ribonuclease H-like Ribonuclease H-like
e3a2fA6 A:348-448,A:503-611 Alpha-beta plaits Adenylyl and guanylyl cyclase catalytic domain-like Adenylyl and guanylyl cyclase catalytic domain-like
e3a2fA1 A:449-502 "fingers" domain in bacteriophage RB69-like DNA polymerase I "fingers" domain in bacteriophage RB69-like DNA polymerase I "fingers" domain in bacteriophage RB69-like DNA polymerase I
e3a2fA2 A:612-773 "thumb" domain in bacteriophage RB69-like DNA polymerase I "thumb" domain in bacteriophage RB69-like DNA polymerase I "thumb" domain in bacteriophage RB69-like DNA polymerase I

Domains in the same PDB:

e3a2fA3 A:1-34,A:115-133 OB-fold Nucleic acid-binding proteins Nucleic acid-binding proteins
e3a2fA4 A:35-114 Alpha-beta plaits Family B DNA polymerase insertion domain Family B DNA polymerase insertion domain
e3a2fA5 A:134-347 Ribonuclease H-like Ribonuclease H-like Ribonuclease H-like
e3a2fA6 A:348-448,A:503-611 Alpha-beta plaits Adenylyl and guanylyl cyclase catalytic domain-like Adenylyl and guanylyl cyclase catalytic domain-like
e3a2fA1 A:449-502 "fingers" domain in bacteriophage RB69-like DNA polymerase I "fingers" domain in bacteriophage RB69-like DNA polymerase I "fingers" domain in bacteriophage RB69-like DNA polymerase I
e3a2fA2 A:612-773 "thumb" domain in bacteriophage RB69-like DNA polymerase I "thumb" domain in bacteriophage RB69-like DNA polymerase I "thumb" domain in bacteriophage RB69-like DNA polymerase I
e3a2fB1 B:2-123 DNA clamp DNA clamp DNA clamp
e3a2fB2 B:124-248 DNA clamp DNA clamp DNA clamp

Structural contacts of domain e3a2fA5 of H-group "Ribonuclease H-like":

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The domain and its neighboring domains (both within the asymmetric unit and to crystallographic symmetry mates) are represented by spheres and linked by lines. Distances between the center of the domain and interfaces are shown for each contact.

Domain IDSymmetry operatorH-groupVisualization
e3a2fB2 A:X-1/2,-Y+1/2,-Z->B:x,y,z DNA clamp Interaction Interface Pymol
e3a2fA3 A:x,y,z->A:X-1/2,-Y-1/2,-Z Nucleic acid-binding proteins Interaction Interface Pymol
e3a2fA4 A:x,y,z->A:X-1/2,-Y-1/2,-Z Family B DNA polymerase insertion domain Interaction Interface Pymol