ECOD: domain e3avrA2

Domain ID e3avrA2

A: few secondary structure elements
X: Glucocorticoid receptor-like
H: LIM domain-like
T: LIM domain-like
F: KDM6_GATAL

UID:	001487571
Type:	Automatic domain
Parent:	e2xueA3
Range:	A:1315-1378
Ligands:	CL ZN
PDB:	3avr
PDB Description:	LYSINE-SPECIFIC DEMETHYLASE 6A
UniProt:	O15550
Hsap BLAST neighbor:	O15550
Species:	Homo sapiens

Domain
In chain context
In PDB context

Structure of domain e3avrA2

Domains in the same chain:

Download Pymol

e3avrA3	A:922-1047,A:1081-1243	jelly-roll	Double-stranded beta-helix	Double-stranded beta-helix
e3avrA1	A:1244-1314,A:1379-1395	C-terminal helical domain in Jumonji domain-containing histone demethylases	C-terminal helical domain in Jumonji domain-containing histone demethylases	C-terminal helical domain in Jumonji domain-containing histone demethylases
e3avrA2	A:1315-1378	Glucocorticoid receptor-like	LIM domain-like	LIM domain-like

Domains in the same PDB:

e3avrA3	A:922-1047,A:1081-1243	jelly-roll	Double-stranded beta-helix	Double-stranded beta-helix
e3avrA1	A:1244-1314,A:1379-1395	C-terminal helical domain in Jumonji domain-containing histone demethylases	C-terminal helical domain in Jumonji domain-containing histone demethylases	C-terminal helical domain in Jumonji domain-containing histone demethylases
e3avrA2	A:1315-1378	Glucocorticoid receptor-like	LIM domain-like	LIM domain-like

Structural contacts of domain e3avrA2 of H-group "LIM domain-like":

Sorry, the images are being generated.

The domain and its neighboring domains (both within the asymmetric unit and to crystallographic symmetry mates) are represented by spheres and linked by lines. Distances between the center of the domain and interfaces are shown for each contact.

Domain ID	Symmetry operator	H-group	Visualization
e3avrA3	A:-X-1/2,-Y,Z-1/2->A:x,y,z	Double-stranded beta-helix	Interaction Interface Pymol
e3avrA1	A:x,y,z->A:X-1/2,-Y+1/2,-Z	C-terminal helical domain in Jumonji domain-containing histone demethylases	Interaction Interface Pymol