Domain ID e3cqzC4

Download files:
  • A: a+b complex topology
  • X: Ribosomal protein TL5/L25 C-terminal domain-like
  • H: Insert subdomain of RNA polymerase alpha subunit
  • T: Insert subdomain of RNA polymerase alpha subunit
  • F: RNA_pol_A_bac
UID: 001258670
Type: Automatic domain
Parent: e1twfC2
Range: C:42-172
Ligands: ZN
PDB: 3cqz
PDB Description: DNA-DIRECTED RNA POLYMERASE II SUBUNIT RPB3
UniProt: P16370
Hsap BLAST neighbor: P19387
Species: Saccharomyces cerevisiae

Structure of domain e3cqzC4

Domains in the same chain:

Download Pymol

e3cqzC3 C:3-41,C:173-267 DCoH-like RBP11-like subunits of RNA polymerase RBP11-like subunits of RNA polymerase
e3cqzC4 C:42-172 Ribosomal protein TL5/L25 C-terminal domain-like Insert subdomain of RNA polymerase alpha subunit Insert subdomain of RNA polymerase alpha subunit

Domains in the same PDB:

e3cqzA9 A:6-304 N-terminal domain in RNA-polymerase beta-prime subunit N-terminal domain in RNA-polymerase beta-prime subunit N-terminal domain in RNA-polymerase beta-prime subunit
e3cqzA8 A:347-374,A:436-519 cradle loop barrel RIFT-related double psi
e3cqzA7 A:375-435 MoeA-I/Ornithine decarboxylase-C/Reverse ferredoxin-like domain in RNA-polymerase MoeA-I/Ornithine decarboxylase-C/Reverse ferredoxin-like domain in RNA-polymerase MoeA-I/Ornithine decarboxylase-C/Reverse ferredoxin-like domain in RNA-polymerase
e3cqzA6 A:520-662 first helical domain in RNA-polymerase beta-prime subunit first helical domain in RNA-polymerase beta-prime subunit first helical domain in RNA-polymerase beta-prime subunit
e3cqzA1 A:663-871 second helical domain in RNA-polymerase beta-prime subunit second helical domain in RNA-polymerase beta-prime subunit second helical domain in RNA-polymerase beta-prime subunit
e3cqzA5 A:872-1059 helical domain in yeast RNA-polymerases third helical domain in yeast RNA-polymerase II beta-prime subunit third helical domain in yeast RNA-polymerase II beta-prime subunit
e3cqzA3 A:1060-1112,A:1331-1450 central helical domain in RNA-polymerase beta-prime subunit central helical domain in RNA-polymerase beta-prime subunit central helical domain in RNA-polymerase beta-prime subunit
e3cqzA4 A:1113-1141,A:1273-1330 ferredoxin-like domain in yeast RNA-polymerase beta-prime subunit ferredoxin-like domain in yeast RNA-polymerase beta-prime subunit ferredoxin-like domain in yeast RNA-polymerase beta-prime subunit
e3cqzA2 A:1142-1272 permuted ferredoxin-like domain in yeast RNA-polymerase beta-prime subunit permuted ferredoxin-like domain in yeast RNA-polymerase beta-prime subunit permuted ferredoxin-like domain in yeast RNA-polymerase beta-prime subunit
e3cqzB4 B:20-69,B:89-134,B:164-218,B:405-541 N-terminal domain in beta subunit of DNA dependent RNA-polymerase N-terminal domain in beta subunit of DNA dependent RNA-polymerase N-terminal domain in beta subunit of DNA dependent RNA-polymerase
e3cqzB3 B:219-404 insertion domain in beta subunit of DNA dependent RNA-polymerase insertion domain in beta subunit of DNA dependent RNA-polymerase insertion domain in beta subunit of DNA dependent RNA-polymerase
e3cqzB1 B:542-630 inserted a+b domain in yeast RNA polymerase beta subunit inserted a+b domain in yeast RNA polymerase beta subunit inserted a+b domain in yeast RNA polymerase beta subunit
e3cqzB7 B:631-813 barrel domain in beta subunit of DNA dependent RNA-polymerase barrel domain in beta subunit of DNA dependent RNA-polymerase barrel domain in beta subunit of DNA dependent RNA-polymerase
e3cqzB6 B:814-850,B:975-1097 cradle loop barrel RIFT-related double psi
e3cqzB2 B:851-974 alpha/beta-Hammerhead/Barrel-sandwich hybrid alpha/beta-Hammerhead/Barrel-sandwich hybrid Single hybrid motif
e3cqzB5 B:1098-1099,B:1127-1222 C-terminal domain in beta subunit of DNA dependent RNA-polymerase C-terminal domain in beta subunit of DNA dependent RNA-polymerase C-terminal domain in beta subunit of DNA dependent RNA-polymerase
e3cqzC3 C:3-41,C:173-267 DCoH-like RBP11-like subunits of RNA polymerase RBP11-like subunits of RNA polymerase
e3cqzC4 C:42-172 Ribosomal protein TL5/L25 C-terminal domain-like Insert subdomain of RNA polymerase alpha subunit Insert subdomain of RNA polymerase alpha subunit
e3cqzE2 E:3-143 Restriction endonuclease-like Eukaryotic RPB5 N-terminal domain Eukaryotic RPB5 N-terminal domain
e3cqzE1 E:144-215 RPB5-like RNA polymerase subunit RPB5-like RNA polymerase subunit RPB5-like RNA polymerase subunit
e3cqzF1 F:72-155 RPB6/omega subunit-like RPB6/omega subunit-like RPB6
e3cqzH2 H:2-146 OB-fold Nucleic acid-binding proteins Nucleic acid-binding proteins
e3cqzI1 I:2-49 Rubredoxin-like Rubredoxin-related Rubredoxin-related
e3cqzI2 I:50-122 Rubredoxin-like Rubredoxin-related Rubredoxin-related
e3cqzJ1 J:1-65 HTH RPB10 RPB10
e3cqzK1 K:2-114 DCoH-like RBP11-like subunits of RNA polymerase RBP11-like subunits of RNA polymerase
e3cqzL1 L:26-70 Rubredoxin-like Rubredoxin-related Rubredoxin-related

Structural contacts of domain e3cqzC4 of H-group "Insert subdomain of RNA polymerase alpha subunit":

The domain and its neighboring domains (both within the asymmetric unit and to crystallographic symmetry mates) are represented by spheres and linked by lines. Distances between the center of the domain and interfaces are shown for each contact.

Domain IDSymmetry operatorH-groupVisualization
e3cqzK1 C:X,Y,Z->K:x,y,z RBP11-like subunits of RNA polymerase Interaction Interface Pymol
e3cqzB6 C:x,y,z->B:X,Y,Z RIFT-related Interaction Interface Pymol
e3cqzB2 C:x,y,z->B:X,Y,Z alpha/beta-Hammerhead/Barrel-sandwich hybrid Interaction Interface Pymol
e3cqzB7 C:x,y,z->B:X,Y,Z barrel domain in beta subunit of DNA dependent RNA-polymerase Interaction Interface Pymol
e3cqzJ1 C:X,Y,Z->J:x,y,z RPB10 Interaction Interface Pymol
e3cqzA7 C:x,y,z->A:-X+1,Y,-Z MoeA-I/Ornithine decarboxylase-C/Reverse ferredoxin-like domain in RNA-polymerase Interaction Interface Pymol
e3cqzB2 C:x,y,z->B:-X+1,Y,-Z alpha/beta-Hammerhead/Barrel-sandwich hybrid Interaction Interface Pymol