Domain ID e3dbhB3

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  • A: a/b three-layered sandwiches
  • X: Rossmann-like
  • H: Rossmann-related
  • T: Activating enzymes of the ubiquitin-like proteins
  • F: ThiF
UID: 001873033
Type: Automatic domain
Parent: e1yovB4
Range: B:11-210,B:289-346
Ligands: ZN
PDB: 3dbh
PDB Description: NEDD8-activating enzyme E1 catalytic subunit
UniProt: Q8TBC4
Hsap BLAST neighbor: Q8TBC4
Species: Homo sapiens

Structure of domain e3dbhB3

Domains in the same chain:

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e3dbhB3 B:11-210,B:289-346 Rossmann-like Rossmann-related Activating enzymes of the ubiquitin-like proteins
e3dbhB2 B:211-288 Catalytic cysteine domain in ubiquitin-activating enzyme Catalytic cysteine domain in ubiquitin-activating enzyme Catalytic cysteine domain in ubiquitin-activating enzyme
e3dbhB1 B:346-442 beta-Grasp E2-binding domain of E1 E2-binding domain of E1

Domains in the same PDB:

e3dbhA1 A:6-534 Rossmann-like Rossmann-related Activating enzymes of the ubiquitin-like proteins
e3dbhB3 B:11-210,B:289-346 Rossmann-like Rossmann-related Activating enzymes of the ubiquitin-like proteins
e3dbhB2 B:211-288 Catalytic cysteine domain in ubiquitin-activating enzyme Catalytic cysteine domain in ubiquitin-activating enzyme Catalytic cysteine domain in ubiquitin-activating enzyme
e3dbhB1 B:346-442 beta-Grasp E2-binding domain of E1 E2-binding domain of E1
e3dbhC1 C:6-534 Rossmann-like Rossmann-related Activating enzymes of the ubiquitin-like proteins
e3dbhD3 D:11-210,D:289-346 Rossmann-like Rossmann-related Activating enzymes of the ubiquitin-like proteins
e3dbhD2 D:211-288 Catalytic cysteine domain in ubiquitin-activating enzyme Catalytic cysteine domain in ubiquitin-activating enzyme Catalytic cysteine domain in ubiquitin-activating enzyme
e3dbhD1 D:346-442 beta-Grasp E2-binding domain of E1 E2-binding domain of E1
e3dbhE1 E:6-534 Rossmann-like Rossmann-related Activating enzymes of the ubiquitin-like proteins
e3dbhF3 F:11-210,F:289-346 Rossmann-like Rossmann-related Activating enzymes of the ubiquitin-like proteins
e3dbhF2 F:211-288 Catalytic cysteine domain in ubiquitin-activating enzyme Catalytic cysteine domain in ubiquitin-activating enzyme Catalytic cysteine domain in ubiquitin-activating enzyme
e3dbhF1 F:346-441 beta-Grasp E2-binding domain of E1 E2-binding domain of E1
e3dbhG1 G:6-534 Rossmann-like Rossmann-related Activating enzymes of the ubiquitin-like proteins
e3dbhH2 H:11-210,H:289-346 Rossmann-like Rossmann-related Activating enzymes of the ubiquitin-like proteins
e3dbhH3 H:211-288 Catalytic cysteine domain in ubiquitin-activating enzyme Catalytic cysteine domain in ubiquitin-activating enzyme Catalytic cysteine domain in ubiquitin-activating enzyme
e3dbhH1 H:346-441 beta-Grasp E2-binding domain of E1 E2-binding domain of E1
e3dbhI1 I:91-176 beta-Grasp Ubiquitin-related Ubiquitin-like
e3dbhJ1 J:101-176 beta-Grasp Ubiquitin-related Ubiquitin-like
e3dbhK1 K:101-176 beta-Grasp Ubiquitin-related Ubiquitin-like
e3dbhL1 L:101-176 beta-Grasp Ubiquitin-related Ubiquitin-like

Structural contacts of domain e3dbhB3 of H-group "Rossmann-related":

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The domain and its neighboring domains (both within the asymmetric unit and to crystallographic symmetry mates) are represented by spheres and linked by lines. Distances between the center of the domain and interfaces are shown for each contact.

Domain IDSymmetry operatorH-groupVisualization
e3dbhA1 B:x,y,z->A:X,Y,Z Rossmann-related Interaction Interface Pymol
e3dbhI1 B:X,Y,Z->I:x,y,z Ubiquitin-related Interaction Interface Pymol
e3dbhD1 B:X,Y,Z->D:x,y,z E2-binding domain of E1 Interaction Interface Pymol
e3dbhD3 B:X,Y,Z->D:x,y,z Rossmann-related Interaction Interface Pymol
e3dbhC1 B:x,y,z->C:X-1/2,-Y+1/2,-Z Rossmann-related Interaction Interface Pymol