ECOD: domain e3dbhD3

Domain ID e3dbhD3

A: a/b three-layered sandwiches
X: Rossmann-like
H: Rossmann-related
T: Activating enzymes of the ubiquitin-like proteins
F: ThiF

UID:	001873036
Type:	Automatic domain
Parent:	e1yovB4
Range:	D:11-210,D:289-346
Ligands:	ZN
PDB:	3dbh
PDB Description:	NEDD8-activating enzyme E1 catalytic subunit
UniProt:	Q8TBC4
Hsap BLAST neighbor:	Q8TBC4
Species:	Homo sapiens

Domains in the same chain:

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e3dbhD3	D:11-210,D:289-346	Rossmann-like	Rossmann-related	Activating enzymes of the ubiquitin-like proteins
e3dbhD2	D:211-288	Catalytic cysteine domain in ubiquitin-activating enzyme	Catalytic cysteine domain in ubiquitin-activating enzyme	Catalytic cysteine domain in ubiquitin-activating enzyme
e3dbhD1	D:346-442	beta-Grasp	E2-binding domain of E1	E2-binding domain of E1

Domains in the same PDB:

e3dbhA1	A:6-534	Rossmann-like	Rossmann-related	Activating enzymes of the ubiquitin-like proteins
e3dbhB3	B:11-210,B:289-346	Rossmann-like	Rossmann-related	Activating enzymes of the ubiquitin-like proteins
e3dbhB2	B:211-288	Catalytic cysteine domain in ubiquitin-activating enzyme	Catalytic cysteine domain in ubiquitin-activating enzyme	Catalytic cysteine domain in ubiquitin-activating enzyme
e3dbhB1	B:346-442	beta-Grasp	E2-binding domain of E1	E2-binding domain of E1
e3dbhC1	C:6-534	Rossmann-like	Rossmann-related	Activating enzymes of the ubiquitin-like proteins
e3dbhD3	D:11-210,D:289-346	Rossmann-like	Rossmann-related	Activating enzymes of the ubiquitin-like proteins
e3dbhD2	D:211-288	Catalytic cysteine domain in ubiquitin-activating enzyme	Catalytic cysteine domain in ubiquitin-activating enzyme	Catalytic cysteine domain in ubiquitin-activating enzyme
e3dbhD1	D:346-442	beta-Grasp	E2-binding domain of E1	E2-binding domain of E1
e3dbhE1	E:6-534	Rossmann-like	Rossmann-related	Activating enzymes of the ubiquitin-like proteins
e3dbhF3	F:11-210,F:289-346	Rossmann-like	Rossmann-related	Activating enzymes of the ubiquitin-like proteins
e3dbhF2	F:211-288	Catalytic cysteine domain in ubiquitin-activating enzyme	Catalytic cysteine domain in ubiquitin-activating enzyme	Catalytic cysteine domain in ubiquitin-activating enzyme
e3dbhF1	F:346-441	beta-Grasp	E2-binding domain of E1	E2-binding domain of E1
e3dbhG1	G:6-534	Rossmann-like	Rossmann-related	Activating enzymes of the ubiquitin-like proteins
e3dbhH2	H:11-210,H:289-346	Rossmann-like	Rossmann-related	Activating enzymes of the ubiquitin-like proteins
e3dbhH3	H:211-288	Catalytic cysteine domain in ubiquitin-activating enzyme	Catalytic cysteine domain in ubiquitin-activating enzyme	Catalytic cysteine domain in ubiquitin-activating enzyme
e3dbhH1	H:346-441	beta-Grasp	E2-binding domain of E1	E2-binding domain of E1
e3dbhI1	I:91-176	beta-Grasp	Ubiquitin-related	Ubiquitin-like
e3dbhJ1	J:101-176	beta-Grasp	Ubiquitin-related	Ubiquitin-like
e3dbhK1	K:101-176	beta-Grasp	Ubiquitin-related	Ubiquitin-like
e3dbhL1	L:101-176	beta-Grasp	Ubiquitin-related	Ubiquitin-like

Structural contacts of domain e3dbhD3 of H-group "Rossmann-related":

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The domain and its neighboring domains (both within the asymmetric unit and to crystallographic symmetry mates) are represented by spheres and linked by lines. Distances between the center of the domain and interfaces are shown for each contact.

Domain ID	Symmetry operator	H-group	Visualization
e3dbhC1	D:x,y,z->C:X,Y,Z	Rossmann-related	Interaction Interface Pymol
e3dbhJ1	D:X,Y,Z->J:x,y,z	Ubiquitin-related	Interaction Interface Pymol
e3dbhB1	D:x,y,z->B:X,Y,Z	E2-binding domain of E1	Interaction Interface Pymol
e3dbhB3	D:x,y,z->B:X,Y,Z	Rossmann-related	Interaction Interface Pymol
e3dbhH3	D:X,Y,Z->H:x,y,z	Catalytic cysteine domain in ubiquitin-activating enzyme	Interaction Interface Pymol