Domain ID e3dbrD3

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  • A: a/b three-layered sandwiches
  • X: Rossmann-like
  • H: Rossmann-related
  • T: Activating enzymes of the ubiquitin-like proteins
  • F: ThiF
UID: 001873060
Type: Automatic domain
Parent: e1yovB4
Range: D:11-210,D:289-346
Ligands: ZN
PDB: 3dbr
PDB Description: NEDD8-activating enzyme E1 catalytic subunit
UniProt: Q8TBC4
Hsap BLAST neighbor: Q8TBC4
Species: Homo sapiens

Structure of domain e3dbrD3

Domains in the same chain:

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e3dbrD3 D:11-210,D:289-346 Rossmann-like Rossmann-related Activating enzymes of the ubiquitin-like proteins
e3dbrD2 D:211-288 Catalytic cysteine domain in ubiquitin-activating enzyme Catalytic cysteine domain in ubiquitin-activating enzyme Catalytic cysteine domain in ubiquitin-activating enzyme
e3dbrD1 D:346-441 beta-Grasp E2-binding domain of E1 E2-binding domain of E1

Domains in the same PDB:

e3dbrA1 A:6-534 Rossmann-like Rossmann-related Activating enzymes of the ubiquitin-like proteins
e3dbrB3 B:11-210,B:289-346 Rossmann-like Rossmann-related Activating enzymes of the ubiquitin-like proteins
e3dbrB2 B:211-288 Catalytic cysteine domain in ubiquitin-activating enzyme Catalytic cysteine domain in ubiquitin-activating enzyme Catalytic cysteine domain in ubiquitin-activating enzyme
e3dbrB1 B:346-442 beta-Grasp E2-binding domain of E1 E2-binding domain of E1
e3dbrC1 C:6-534 Rossmann-like Rossmann-related Activating enzymes of the ubiquitin-like proteins
e3dbrD3 D:11-210,D:289-346 Rossmann-like Rossmann-related Activating enzymes of the ubiquitin-like proteins
e3dbrD2 D:211-288 Catalytic cysteine domain in ubiquitin-activating enzyme Catalytic cysteine domain in ubiquitin-activating enzyme Catalytic cysteine domain in ubiquitin-activating enzyme
e3dbrD1 D:346-441 beta-Grasp E2-binding domain of E1 E2-binding domain of E1
e3dbrE1 E:6-534 Rossmann-like Rossmann-related Activating enzymes of the ubiquitin-like proteins
e3dbrF3 F:11-210,F:289-346 Rossmann-like Rossmann-related Activating enzymes of the ubiquitin-like proteins
e3dbrF2 F:211-288 Catalytic cysteine domain in ubiquitin-activating enzyme Catalytic cysteine domain in ubiquitin-activating enzyme Catalytic cysteine domain in ubiquitin-activating enzyme
e3dbrF1 F:346-441 beta-Grasp E2-binding domain of E1 E2-binding domain of E1
e3dbrG1 G:6-534 Rossmann-like Rossmann-related Activating enzymes of the ubiquitin-like proteins
e3dbrH3 H:11-210,H:289-346 Rossmann-like Rossmann-related Activating enzymes of the ubiquitin-like proteins
e3dbrH2 H:211-288 Catalytic cysteine domain in ubiquitin-activating enzyme Catalytic cysteine domain in ubiquitin-activating enzyme Catalytic cysteine domain in ubiquitin-activating enzyme
e3dbrH1 H:346-441 beta-Grasp E2-binding domain of E1 E2-binding domain of E1
e3dbrI1 I:91-176 beta-Grasp Ubiquitin-related Ubiquitin-like
e3dbrJ1 J:100-176 beta-Grasp Ubiquitin-related Ubiquitin-like
e3dbrK1 K:100-176 beta-Grasp Ubiquitin-related Ubiquitin-like
e3dbrL1 L:99-176 beta-Grasp Ubiquitin-related Ubiquitin-like

Structural contacts of domain e3dbrD3 of H-group "Rossmann-related":

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The domain and its neighboring domains (both within the asymmetric unit and to crystallographic symmetry mates) are represented by spheres and linked by lines. Distances between the center of the domain and interfaces are shown for each contact.

Domain IDSymmetry operatorH-groupVisualization
e3dbrC1 D:x,y,z->C:X,Y,Z Rossmann-related Interaction Interface Pymol
e3dbrJ1 D:X,Y,Z->J:x,y,z Ubiquitin-related Interaction Interface Pymol
e3dbrB1 D:x,y,z->B:X,Y,Z E2-binding domain of E1 Interaction Interface Pymol
e3dbrB3 D:x,y,z->B:X,Y,Z Rossmann-related Interaction Interface Pymol
e3dbrH2 D:X,Y,Z->H:x,y,z Catalytic cysteine domain in ubiquitin-activating enzyme Interaction Interface Pymol