ECOD: domain e3ddoF1

Domain ID e3ddoF1

A: a/b three-layered sandwiches
X: Phosphorylase/hydrolase-like
H: Peptidyl-tRNA hydrolase-like
T: Peptidyl-tRNA hydrolase-like
F: PNP_UDP_1

UID:	000364776
Type:	Automatic domain
Parent:	e3pnpA1
Range:	F:6004-6253
Ligands:	PO4
PDB:	3ddo
PDB Description:	URIDINE PHOSPHORYLASE
UniProt:	P0A1F6
Hsap BLAST neighbor:	O95045
Species:

Domains in the same chain:

Download Pymol

e3ddoF1	F:6004-6253	Phosphorylase/hydrolase-like	Peptidyl-tRNA hydrolase-like	Peptidyl-tRNA hydrolase-like

Domains in the same PDB:

Structural contacts of domain e3ddoF1 of H-group "Peptidyl-tRNA hydrolase-like":

The domain and its neighboring domains (both within the asymmetric unit and to crystallographic symmetry mates) are represented by spheres and linked by lines. Distances between the center of the domain and interfaces are shown for each contact.

Domain ID	Symmetry operator	H-group	Visualization
e3ddoA1	F:x,y,z->A:X,Y,Z	Peptidyl-tRNA hydrolase-like	Interaction Interface Pymol
e3ddoB1	F:x,y,z->B:X,Y,Z	Peptidyl-tRNA hydrolase-like	Interaction Interface Pymol
e3ddoC1	F:x,y,z->C:-X+1/2,-Y,Z-1/2	Peptidyl-tRNA hydrolase-like	Interaction Interface Pymol
e3ddoC1	F:x,y,z->C:-X+3/2,-Y,Z-1/2	Peptidyl-tRNA hydrolase-like	Interaction Interface Pymol
e3ddoE1	F:x,y,z->E:X,Y,Z	Peptidyl-tRNA hydrolase-like	Interaction Interface Pymol
e3ddoD1	F:x,y,z->D:X,Y,Z	Peptidyl-tRNA hydrolase-like	Interaction Interface Pymol

e3ddoA1	A:1004-1253	Phosphorylase/hydrolase-like	Peptidyl-tRNA hydrolase-like	Peptidyl-tRNA hydrolase-like
e3ddoB1	B:2003-2253	Phosphorylase/hydrolase-like	Peptidyl-tRNA hydrolase-like	Peptidyl-tRNA hydrolase-like
e3ddoC1	C:3002-3253	Phosphorylase/hydrolase-like	Peptidyl-tRNA hydrolase-like	Peptidyl-tRNA hydrolase-like
e3ddoD1	D:4003-4253	Phosphorylase/hydrolase-like	Peptidyl-tRNA hydrolase-like	Peptidyl-tRNA hydrolase-like
e3ddoE1	E:5004-5253	Phosphorylase/hydrolase-like	Peptidyl-tRNA hydrolase-like	Peptidyl-tRNA hydrolase-like
e3ddoF1	F:6004-6253	Phosphorylase/hydrolase-like	Peptidyl-tRNA hydrolase-like	Peptidyl-tRNA hydrolase-like