Domain ID e3e0dB6

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  • A: a+b three layers
  • X: Nucleotidyltransferase-like
  • H: Nucleotidyltransferase
  • T: Nucleotidyltransferase
  • F: DNA_pol3_alpha
UID: 001772389
Type: Automatic domain
Parent: e2hpiA2
Range: B:286-622
Ligands: CA DTP
PDB: 3e0d
PDB Description: DNA polymerase III subunit alpha
UniProt: Q9XDH5
Species: Thermus aquaticus

Structure of domain e3e0dB6

Domains in the same chain:

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e3e0dB4 B:5-285 TIM beta/alpha-barrel TIM barrels TIM barrels
e3e0dB6 B:286-622 Nucleotidyltransferase-like Nucleotidyltransferase Nucleotidyltransferase
e3e0dB2 B:623-835 DNA polymerase III finger domain DNA polymerase III finger domain DNA polymerase III finger domain
e3e0dB5 B:836-1012 HhH/H2TH SAM/DNA-glycosylase SAM domain-like
e3e0dB3 B:1013-1126 OB-fold Nucleic acid-binding proteins Nucleic acid-binding proteins
e3e0dB7 B:1127-1205 DNA polymerase III C-terminal domain DNA polymerase III C-terminal domain DNA polymerase III C-terminal domain

Domains in the same PDB:

e3e0dA5 A:5-285 TIM beta/alpha-barrel TIM barrels TIM barrels
e3e0dA4 A:286-622 Nucleotidyltransferase-like Nucleotidyltransferase Nucleotidyltransferase
e3e0dA3 A:623-835 DNA polymerase III finger domain DNA polymerase III finger domain DNA polymerase III finger domain
e3e0dA1 A:836-1012 HhH/H2TH SAM/DNA-glycosylase SAM domain-like
e3e0dA6 A:1013-1126 OB-fold Nucleic acid-binding proteins Nucleic acid-binding proteins
e3e0dA2 A:1127-1205 DNA polymerase III C-terminal domain DNA polymerase III C-terminal domain DNA polymerase III C-terminal domain
e3e0dB4 B:5-285 TIM beta/alpha-barrel TIM barrels TIM barrels
e3e0dB6 B:286-622 Nucleotidyltransferase-like Nucleotidyltransferase Nucleotidyltransferase
e3e0dB2 B:623-835 DNA polymerase III finger domain DNA polymerase III finger domain DNA polymerase III finger domain
e3e0dB5 B:836-1012 HhH/H2TH SAM/DNA-glycosylase SAM domain-like
e3e0dB3 B:1013-1126 OB-fold Nucleic acid-binding proteins Nucleic acid-binding proteins
e3e0dB7 B:1127-1205 DNA polymerase III C-terminal domain DNA polymerase III C-terminal domain DNA polymerase III C-terminal domain

Structural contacts of domain e3e0dB6 of H-group "Nucleotidyltransferase":

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The domain and its neighboring domains (both within the asymmetric unit and to crystallographic symmetry mates) are represented by spheres and linked by lines. Distances between the center of the domain and interfaces are shown for each contact.

Domain IDSymmetry operatorH-groupVisualization
e3e0dA3 B:x,y,z->A:X,Y,Z DNA polymerase III finger domain Interaction Interface Pymol
e3e0dA5 B:x,y,z->A:X,Y,Z TIM barrels Interaction Interface Pymol
e3e0dA3 B:x,y,z->A:-X+1,-Y,Z-1/2 DNA polymerase III finger domain Interaction Interface Pymol