ECOD: domain e3fdsA5

Domain ID e3fdsA5

A: alpha arrays
X: HhH/H2TH
H: SAM/DNA-glycosylase
T: SAM domain-like
F: IMS_HHH

UID:	001256072
Type:	Automatic domain
Parent:	e1jx4A1
Range:	A:178-240
PDB:	3fds
PDB Description:	DNA polymerase IV
UniProt:	Q97W02
Species:	Sulfolobus solfataricus

Domain
In chain context
In PDB context

Structure of domain e3fdsA5

Domains in the same chain:

Download Pymol

e3fdsA7	A:1-21,A:77-177	Alpha-beta plaits	Adenylyl and guanylyl cyclase catalytic domain-like	Adenylyl and guanylyl cyclase catalytic domain-like
e3fdsA6	A:22-76	Hypothetical protein Ta1206-like	Hypothetical protein Ta1206-like	Hypothetical protein Ta1206-like
e3fdsA5	A:178-240	HhH/H2TH	SAM/DNA-glycosylase	SAM domain-like
e3fdsA2	A:241-352	Reverse ferredoxin	Lesion bypass DNA polymerase (Y-family), little finger domain	Lesion bypass DNA polymerase (Y-family), little finger domain

Domains in the same PDB:

e3fdsA7	A:1-21,A:77-177	Alpha-beta plaits	Adenylyl and guanylyl cyclase catalytic domain-like	Adenylyl and guanylyl cyclase catalytic domain-like
e3fdsA6	A:22-76	Hypothetical protein Ta1206-like	Hypothetical protein Ta1206-like	Hypothetical protein Ta1206-like
e3fdsA5	A:178-240	HhH/H2TH	SAM/DNA-glycosylase	SAM domain-like
e3fdsA2	A:241-352	Reverse ferredoxin	Lesion bypass DNA polymerase (Y-family), little finger domain	Lesion bypass DNA polymerase (Y-family), little finger domain
e3fdsC1	C:1-118	DNA clamp	DNA clamp	DNA clamp
e3fdsC2	C:119-249	DNA clamp	DNA clamp	DNA clamp
e3fdsD1	D:1-115	DNA clamp	DNA clamp	DNA clamp
e3fdsD2	D:116-245	DNA clamp	DNA clamp	DNA clamp

Structural contacts of domain e3fdsA5 of H-group "SAM/DNA-glycosylase":

The domain and its neighboring domains (both within the asymmetric unit and to crystallographic symmetry mates) are represented by spheres and linked by lines. Distances between the center of the domain and interfaces are shown for each contact.

Domain ID	Symmetry operator	H-group	Visualization
e3fdsC2	A:X,Y,Z->C:x,y,z	DNA clamp	Interaction Interface Pymol