ECOD: domain e3fdsC1

Domain ID e3fdsC1

A: a+b two layers
X: DNA clamp
H: DNA clamp
T: DNA clamp
F: PCNA_N

UID:	000356296
Type:	Automatic domain
Parent:	e1iz5A1
Range:	C:1-118
Ligands:	EDO GOL
PDB:	3fds
PDB Description:	DNA polymerase sliding clamp B
UniProt:	P57766
Species:	Sulfolobus solfataricus

Domain
In chain context
In PDB context

Structure of domain e3fdsC1

Domains in the same chain:

Download Pymol

e3fdsC1	C:1-118	DNA clamp	DNA clamp	DNA clamp
e3fdsC2	C:119-249	DNA clamp	DNA clamp	DNA clamp

Domains in the same PDB:

e3fdsA7	A:1-21,A:77-177	Alpha-beta plaits	Adenylyl and guanylyl cyclase catalytic domain-like	Adenylyl and guanylyl cyclase catalytic domain-like
e3fdsA6	A:22-76	Hypothetical protein Ta1206-like	Hypothetical protein Ta1206-like	Hypothetical protein Ta1206-like
e3fdsA5	A:178-240	HhH/H2TH	SAM/DNA-glycosylase	SAM domain-like
e3fdsA2	A:241-352	Reverse ferredoxin	Lesion bypass DNA polymerase (Y-family), little finger domain	Lesion bypass DNA polymerase (Y-family), little finger domain
e3fdsC1	C:1-118	DNA clamp	DNA clamp	DNA clamp
e3fdsC2	C:119-249	DNA clamp	DNA clamp	DNA clamp
e3fdsD1	D:1-115	DNA clamp	DNA clamp	DNA clamp
e3fdsD2	D:116-245	DNA clamp	DNA clamp	DNA clamp

Structural contacts of domain e3fdsC1 of H-group "DNA clamp":

The domain and its neighboring domains (both within the asymmetric unit and to crystallographic symmetry mates) are represented by spheres and linked by lines. Distances between the center of the domain and interfaces are shown for each contact.

Domain ID	Symmetry operator	H-group	Visualization
e3fdsA2	C:x,y,z->A:X,Y,Z	Lesion bypass DNA polymerase (Y-family), little finger domain	Interaction Interface Pymol
e3fdsA7	C:x,y,z->A:X-1,Y,Z	Adenylyl and guanylyl cyclase catalytic domain-like	Interaction Interface Pymol
e3fdsA6	C:x,y,z->A:-X-1,Y-1/2,-Z	Hypothetical protein Ta1206-like	Interaction Interface Pymol