ECOD: domain e3gdeA2

Domain ID e3gdeA2

A: beta barrels
X: OB-fold
H: Nucleic acid-binding proteins
T: Nucleic acid-binding proteins
F: DNA_ligase_A_C

UID:	000137438
Type:	Automatic domain
Parent:	e1x9nA1
Range:	A:422-550
Ligands:	PO4
PDB:	3gde
PDB Description:	DNA ligase
UniProt:	O29632
Hsap BLAST neighbor:	P18858
Species:	Archaeoglobus fulgidus

Domains in the same chain:

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e3gdeA7	A:-2-98	ATP-dependent DNA ligase DNA-binding domain	ATP-dependent DNA ligase DNA-binding domain	ATP-dependent DNA ligase DNA-binding domain
e3gdeA6	A:99-215	ATP-dependent DNA ligase DNA-binding domain	ATP-dependent DNA ligase DNA-binding domain	ATP-dependent DNA ligase DNA-binding domain
e3gdeA5	A:216-421	Protein kinase/SAICAR synthase/ATP-grasp	Protein kinase/SAICAR synthase/ATP-grasp	ATP-grasp
e3gdeA2	A:422-550	OB-fold	Nucleic acid-binding proteins	Nucleic acid-binding proteins

Domains in the same PDB:

e3gdeA7	A:-2-98	ATP-dependent DNA ligase DNA-binding domain	ATP-dependent DNA ligase DNA-binding domain	ATP-dependent DNA ligase DNA-binding domain
e3gdeA6	A:99-215	ATP-dependent DNA ligase DNA-binding domain	ATP-dependent DNA ligase DNA-binding domain	ATP-dependent DNA ligase DNA-binding domain
e3gdeA5	A:216-421	Protein kinase/SAICAR synthase/ATP-grasp	Protein kinase/SAICAR synthase/ATP-grasp	ATP-grasp
e3gdeA2	A:422-550	OB-fold	Nucleic acid-binding proteins	Nucleic acid-binding proteins

Structural contacts of domain e3gdeA2 of H-group "Nucleic acid-binding proteins":

The domain and its neighboring domains (both within the asymmetric unit and to crystallographic symmetry mates) are represented by spheres and linked by lines. Distances between the center of the domain and interfaces are shown for each contact.

Domain ID	Symmetry operator	H-group	Visualization
e3gdeA6	A:-Y-1/2,X-1/2,Z+1/4->A:x,y,z	ATP-dependent DNA ligase DNA-binding domain	Interaction Interface Pymol
e3gdeA7	A:-Y-1/2,X-1/2,Z+1/4->A:x,y,z	ATP-dependent DNA ligase DNA-binding domain	Interaction Interface Pymol
e3gdeA5	A:x,y,z->A:-X+1/2,Y-1/2,-Z+1/4	Protein kinase/SAICAR synthase/ATP-grasp	Interaction Interface Pymol