Domain ID e3h0gA2

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  • A: a+b complex topology
  • X: N-terminal domain in RNA-polymerase beta-prime subunit
  • H: N-terminal domain in RNA-polymerase beta-prime subunit
  • T: N-terminal domain in RNA-polymerase beta-prime subunit
  • F: RNA_pol_Rpb1_1
UID: 001755881
Type: Automatic domain
Parent: e1twfA4
Range: A:2-342
Ligands: ZN
PDB: 3h0g
PDB Description: DNA-directed RNA polymerase II subunit rpb1
UniProt: P36594
Hsap BLAST neighbor: P24928
Species:

Structure of domain e3h0gA2

Domains in the same chain:

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e3h0gA2 A:2-342 N-terminal domain in RNA-polymerase beta-prime subunit N-terminal domain in RNA-polymerase beta-prime subunit N-terminal domain in RNA-polymerase beta-prime subunit
e3h0gA8 A:340-525 cradle loop barrel RIFT-related double psi
e3h0gA6 A:526-668 first helical domain in RNA-polymerase beta-prime subunit first helical domain in RNA-polymerase beta-prime subunit first helical domain in RNA-polymerase beta-prime subunit
e3h0gA3 A:669-877 second helical domain in RNA-polymerase beta-prime subunit second helical domain in RNA-polymerase beta-prime subunit second helical domain in RNA-polymerase beta-prime subunit
e3h0gA4 A:878-1062 helical domain in yeast RNA-polymerases third helical domain in yeast RNA-polymerase II beta-prime subunit third helical domain in yeast RNA-polymerase II beta-prime subunit
e3h0gA5 A:1063-1116,A:1338-1456 central helical domain in RNA-polymerase beta-prime subunit central helical domain in RNA-polymerase beta-prime subunit central helical domain in RNA-polymerase beta-prime subunit
e3h0gA7 A:1145-1278 permuted ferredoxin-like domain in yeast RNA-polymerase beta-prime subunit permuted ferredoxin-like domain in yeast RNA-polymerase beta-prime subunit permuted ferredoxin-like domain in yeast RNA-polymerase beta-prime subunit
e3h0gA9 A:1272-1337 ferredoxin-like domain in yeast RNA-polymerase beta-prime subunit ferredoxin-like domain in yeast RNA-polymerase beta-prime subunit ferredoxin-like domain in yeast RNA-polymerase beta-prime subunit

Domains in the same PDB:

e3h0gA2 A:2-342 N-terminal domain in RNA-polymerase beta-prime subunit N-terminal domain in RNA-polymerase beta-prime subunit N-terminal domain in RNA-polymerase beta-prime subunit
e3h0gA8 A:340-525 cradle loop barrel RIFT-related double psi
e3h0gA6 A:526-668 first helical domain in RNA-polymerase beta-prime subunit first helical domain in RNA-polymerase beta-prime subunit first helical domain in RNA-polymerase beta-prime subunit
e3h0gA3 A:669-877 second helical domain in RNA-polymerase beta-prime subunit second helical domain in RNA-polymerase beta-prime subunit second helical domain in RNA-polymerase beta-prime subunit
e3h0gA4 A:878-1062 helical domain in yeast RNA-polymerases third helical domain in yeast RNA-polymerase II beta-prime subunit third helical domain in yeast RNA-polymerase II beta-prime subunit
e3h0gA5 A:1063-1116,A:1338-1456 central helical domain in RNA-polymerase beta-prime subunit central helical domain in RNA-polymerase beta-prime subunit central helical domain in RNA-polymerase beta-prime subunit
e3h0gA7 A:1145-1278 permuted ferredoxin-like domain in yeast RNA-polymerase beta-prime subunit permuted ferredoxin-like domain in yeast RNA-polymerase beta-prime subunit permuted ferredoxin-like domain in yeast RNA-polymerase beta-prime subunit
e3h0gA9 A:1272-1337 ferredoxin-like domain in yeast RNA-polymerase beta-prime subunit ferredoxin-like domain in yeast RNA-polymerase beta-prime subunit ferredoxin-like domain in yeast RNA-polymerase beta-prime subunit
e3h0gB1 B:10-57,B:77-121,B:149-203,B:391-527 N-terminal domain in beta subunit of DNA dependent RNA-polymerase N-terminal domain in beta subunit of DNA dependent RNA-polymerase N-terminal domain in beta subunit of DNA dependent RNA-polymerase
e3h0gB2 B:204-390 insertion domain in beta subunit of DNA dependent RNA-polymerase insertion domain in beta subunit of DNA dependent RNA-polymerase insertion domain in beta subunit of DNA dependent RNA-polymerase
e3h0gB6 B:528-616 inserted a+b domain in yeast RNA polymerase beta subunit inserted a+b domain in yeast RNA polymerase beta subunit inserted a+b domain in yeast RNA polymerase beta subunit
e3h0gB3 B:617-802 barrel domain in beta subunit of DNA dependent RNA-polymerase barrel domain in beta subunit of DNA dependent RNA-polymerase barrel domain in beta subunit of DNA dependent RNA-polymerase
e3h0gB7 B:803-839,B:964-1086 cradle loop barrel RIFT-related double psi
e3h0gB5 B:840-963 alpha/beta-Hammerhead/Barrel-sandwich hybrid alpha/beta-Hammerhead/Barrel-sandwich hybrid Single hybrid motif
e3h0gB4 B:1087-1210 C-terminal domain in beta subunit of DNA dependent RNA-polymerase C-terminal domain in beta subunit of DNA dependent RNA-polymerase C-terminal domain in beta subunit of DNA dependent RNA-polymerase
e3h0gC3 C:4-40,C:174-266 DCoH-like RBP11-like subunits of RNA polymerase RBP11-like subunits of RNA polymerase
e3h0gC4 C:41-173 Ribosomal protein TL5/L25 C-terminal domain-like Insert subdomain of RNA polymerase alpha subunit Insert subdomain of RNA polymerase alpha subunit
e3h0gD1 D:6-135 HhH/H2TH SAM/DNA-glycosylase SAM domain-like
e3h0gE2 E:4-138 Restriction endonuclease-like Eukaryotic RPB5 N-terminal domain Eukaryotic RPB5 N-terminal domain
e3h0gE1 E:139-210 RPB5-like RNA polymerase subunit RPB5-like RNA polymerase subunit RPB5-like RNA polymerase subunit
e3h0gF1 F:60-142 RPB6/omega subunit-like RPB6/omega subunit-like RPB6
e3h0gG4 G:3-69 Dodecin subunit-like Flavin-binding protein dodecin-like Flavin-binding protein dodecin-like
e3h0gG3 G:70-172 OB-fold Nucleic acid-binding proteins Nucleic acid-binding proteins
e3h0gH1 H:2-125 OB-fold Nucleic acid-binding proteins Nucleic acid-binding proteins
e3h0gI3 I:3-50 Rubredoxin-like Rubredoxin-related Rubredoxin-related
e3h0gI4 I:51-113 Rubredoxin-like Rubredoxin-related Rubredoxin-related
e3h0gJ1 J:1-64 HTH RPB10 RPB10
e3h0gK1 K:1-119 DCoH-like RBP11-like subunits of RNA polymerase RBP11-like subunits of RNA polymerase
e3h0gL1 L:19-63 Rubredoxin-like Rubredoxin-related Rubredoxin-related
e3h0gM6 M:2-342 N-terminal domain in RNA-polymerase beta-prime subunit N-terminal domain in RNA-polymerase beta-prime subunit N-terminal domain in RNA-polymerase beta-prime subunit
e3h0gM5 M:343-380,M:442-525 cradle loop barrel RIFT-related double psi
e3h0gM1 M:381-441 MoeA-I/Ornithine decarboxylase-C/Reverse ferredoxin-like domain in RNA-polymerase MoeA-I/Ornithine decarboxylase-C/Reverse ferredoxin-like domain in RNA-polymerase MoeA-I/Ornithine decarboxylase-C/Reverse ferredoxin-like domain in RNA-polymerase
e3h0gM9 M:526-668 first helical domain in RNA-polymerase beta-prime subunit first helical domain in RNA-polymerase beta-prime subunit first helical domain in RNA-polymerase beta-prime subunit
e3h0gM7 M:669-877 second helical domain in RNA-polymerase beta-prime subunit second helical domain in RNA-polymerase beta-prime subunit second helical domain in RNA-polymerase beta-prime subunit
e3h0gM2 M:878-1062 helical domain in yeast RNA-polymerases third helical domain in yeast RNA-polymerase II beta-prime subunit third helical domain in yeast RNA-polymerase II beta-prime subunit
e3h0gM3 M:1063-1115,M:1337-1459,M:1491-1508 central helical domain in RNA-polymerase beta-prime subunit central helical domain in RNA-polymerase beta-prime subunit central helical domain in RNA-polymerase beta-prime subunit
e3h0gM4 M:1116-1144,M:1279-1336 ferredoxin-like domain in yeast RNA-polymerase beta-prime subunit ferredoxin-like domain in yeast RNA-polymerase beta-prime subunit ferredoxin-like domain in yeast RNA-polymerase beta-prime subunit
e3h0gM8 M:1145-1278 permuted ferredoxin-like domain in yeast RNA-polymerase beta-prime subunit permuted ferredoxin-like domain in yeast RNA-polymerase beta-prime subunit permuted ferredoxin-like domain in yeast RNA-polymerase beta-prime subunit
e3h0gN6 N:10-57,N:77-121,N:149-203,N:391-527 N-terminal domain in beta subunit of DNA dependent RNA-polymerase N-terminal domain in beta subunit of DNA dependent RNA-polymerase N-terminal domain in beta subunit of DNA dependent RNA-polymerase
e3h0gN3 N:204-390 insertion domain in beta subunit of DNA dependent RNA-polymerase insertion domain in beta subunit of DNA dependent RNA-polymerase insertion domain in beta subunit of DNA dependent RNA-polymerase
e3h0gN1 N:528-616 inserted a+b domain in yeast RNA polymerase beta subunit inserted a+b domain in yeast RNA polymerase beta subunit inserted a+b domain in yeast RNA polymerase beta subunit
e3h0gN7 N:617-802 barrel domain in beta subunit of DNA dependent RNA-polymerase barrel domain in beta subunit of DNA dependent RNA-polymerase barrel domain in beta subunit of DNA dependent RNA-polymerase
e3h0gN5 N:803-839,N:964-1086 cradle loop barrel RIFT-related double psi
e3h0gN2 N:840-963 alpha/beta-Hammerhead/Barrel-sandwich hybrid alpha/beta-Hammerhead/Barrel-sandwich hybrid Single hybrid motif
e3h0gN4 N:1087-1210 C-terminal domain in beta subunit of DNA dependent RNA-polymerase C-terminal domain in beta subunit of DNA dependent RNA-polymerase C-terminal domain in beta subunit of DNA dependent RNA-polymerase
e3h0gO1 O:4-36,O:174-266 DCoH-like RBP11-like subunits of RNA polymerase RBP11-like subunits of RNA polymerase
e3h0gO2 O:37-173 Ribosomal protein TL5/L25 C-terminal domain-like Insert subdomain of RNA polymerase alpha subunit Insert subdomain of RNA polymerase alpha subunit
e3h0gP1 P:6-135 HhH/H2TH SAM/DNA-glycosylase SAM domain-like
e3h0gQ2 Q:4-138 Restriction endonuclease-like Eukaryotic RPB5 N-terminal domain Eukaryotic RPB5 N-terminal domain
e3h0gQ1 Q:139-210 RPB5-like RNA polymerase subunit RPB5-like RNA polymerase subunit RPB5-like RNA polymerase subunit
e3h0gR1 R:60-142 RPB6/omega subunit-like RPB6/omega subunit-like RPB6
e3h0gS4 S:3-69 Dodecin subunit-like Flavin-binding protein dodecin-like Flavin-binding protein dodecin-like
e3h0gS3 S:70-172 OB-fold Nucleic acid-binding proteins Nucleic acid-binding proteins
e3h0gT1 T:2-125 OB-fold Nucleic acid-binding proteins Nucleic acid-binding proteins
e3h0gU3 U:3-50 Rubredoxin-like Rubredoxin-related Rubredoxin-related
e3h0gU4 U:51-113 Rubredoxin-like Rubredoxin-related Rubredoxin-related
e3h0gV1 V:1-64 HTH RPB10 RPB10
e3h0gW1 W:1-119 DCoH-like RBP11-like subunits of RNA polymerase RBP11-like subunits of RNA polymerase
e3h0gX1 X:19-63 Rubredoxin-like Rubredoxin-related Rubredoxin-related

Structural contacts of domain e3h0gA2 of H-group "N-terminal domain in RNA-polymerase beta-prime subunit":

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The domain and its neighboring domains (both within the asymmetric unit and to crystallographic symmetry mates) are represented by spheres and linked by lines. Distances between the center of the domain and interfaces are shown for each contact.

Domain IDSymmetry operatorH-groupVisualization
e3h0gB5 A:X,Y,Z->B:x,y,z alpha/beta-Hammerhead/Barrel-sandwich hybrid Interaction Interface Pymol
e3h0gB1 A:X,Y,Z->B:x,y,z N-terminal domain in beta subunit of DNA dependent RNA-polymerase Interaction Interface Pymol
e3h0gB4 A:X,Y,Z->B:x,y,z C-terminal domain in beta subunit of DNA dependent RNA-polymerase Interaction Interface Pymol
e3h0gG4 A:X,Y,Z->G:x,y,z Flavin-binding protein dodecin-like Interaction Interface Pymol
e3h0gW1 A:X,Y,Z->W:x,y,z RBP11-like subunits of RNA polymerase Interaction Interface Pymol
e3h0gT1 A:x,y,z->T:-X,Y-1/2,-Z-1/2 Nucleic acid-binding proteins Interaction Interface Pymol
e3h0gO1 A:X,Y,Z->O:x,y,z RBP11-like subunits of RNA polymerase Interaction Interface Pymol