ECOD: domain e3h0gA8

Domain ID e3h0gA8

Download files:

A: beta barrels
X: cradle loop barrel
H: RIFT-related
T: double psi
F: RNA_pol_Rpb1_2

UID:	001755886
Type:	Automatic domain
Parent:	e1twfA1
Range:	A:340-525
PDB:	3h0g
PDB Description:	DNA-directed RNA polymerase II subunit rpb1
UniProt:	P36594
Hsap BLAST neighbor:	P24928
Species:

Domains in the same chain:

e3h0gA2	A:2-342	N-terminal domain in RNA-polymerase beta-prime subunit	N-terminal domain in RNA-polymerase beta-prime subunit	N-terminal domain in RNA-polymerase beta-prime subunit
e3h0gA8	A:340-525	cradle loop barrel	RIFT-related	double psi
e3h0gA6	A:526-668	first helical domain in RNA-polymerase beta-prime subunit	first helical domain in RNA-polymerase beta-prime subunit	first helical domain in RNA-polymerase beta-prime subunit
e3h0gA3	A:669-877	second helical domain in RNA-polymerase beta-prime subunit	second helical domain in RNA-polymerase beta-prime subunit	second helical domain in RNA-polymerase beta-prime subunit
e3h0gA4	A:878-1062	helical domain in yeast RNA-polymerases	third helical domain in yeast RNA-polymerase II beta-prime subunit	third helical domain in yeast RNA-polymerase II beta-prime subunit
e3h0gA5	A:1063-1116,A:1338-1456	central helical domain in RNA-polymerase beta-prime subunit	central helical domain in RNA-polymerase beta-prime subunit	central helical domain in RNA-polymerase beta-prime subunit
e3h0gA7	A:1145-1278	permuted ferredoxin-like domain in yeast RNA-polymerase beta-prime subunit	permuted ferredoxin-like domain in yeast RNA-polymerase beta-prime subunit	permuted ferredoxin-like domain in yeast RNA-polymerase beta-prime subunit
e3h0gA9	A:1272-1337	ferredoxin-like domain in yeast RNA-polymerase beta-prime subunit	ferredoxin-like domain in yeast RNA-polymerase beta-prime subunit	ferredoxin-like domain in yeast RNA-polymerase beta-prime subunit

Domains in the same PDB:

e3h0gA2	A:2-342	N-terminal domain in RNA-polymerase beta-prime subunit	N-terminal domain in RNA-polymerase beta-prime subunit	N-terminal domain in RNA-polymerase beta-prime subunit
e3h0gA8	A:340-525	cradle loop barrel	RIFT-related	double psi
e3h0gA6	A:526-668	first helical domain in RNA-polymerase beta-prime subunit	first helical domain in RNA-polymerase beta-prime subunit	first helical domain in RNA-polymerase beta-prime subunit
e3h0gA3	A:669-877	second helical domain in RNA-polymerase beta-prime subunit	second helical domain in RNA-polymerase beta-prime subunit	second helical domain in RNA-polymerase beta-prime subunit
e3h0gA4	A:878-1062	helical domain in yeast RNA-polymerases	third helical domain in yeast RNA-polymerase II beta-prime subunit	third helical domain in yeast RNA-polymerase II beta-prime subunit
e3h0gA5	A:1063-1116,A:1338-1456	central helical domain in RNA-polymerase beta-prime subunit	central helical domain in RNA-polymerase beta-prime subunit	central helical domain in RNA-polymerase beta-prime subunit
e3h0gA7	A:1145-1278	permuted ferredoxin-like domain in yeast RNA-polymerase beta-prime subunit	permuted ferredoxin-like domain in yeast RNA-polymerase beta-prime subunit	permuted ferredoxin-like domain in yeast RNA-polymerase beta-prime subunit
e3h0gA9	A:1272-1337	ferredoxin-like domain in yeast RNA-polymerase beta-prime subunit	ferredoxin-like domain in yeast RNA-polymerase beta-prime subunit	ferredoxin-like domain in yeast RNA-polymerase beta-prime subunit
e3h0gB1	B:10-57,B:77-121,B:149-203,B:391-527	N-terminal domain in beta subunit of DNA dependent RNA-polymerase	N-terminal domain in beta subunit of DNA dependent RNA-polymerase	N-terminal domain in beta subunit of DNA dependent RNA-polymerase
e3h0gB2	B:204-390	insertion domain in beta subunit of DNA dependent RNA-polymerase	insertion domain in beta subunit of DNA dependent RNA-polymerase	insertion domain in beta subunit of DNA dependent RNA-polymerase
e3h0gB6	B:528-616	inserted a+b domain in yeast RNA polymerase beta subunit	inserted a+b domain in yeast RNA polymerase beta subunit	inserted a+b domain in yeast RNA polymerase beta subunit
e3h0gB3	B:617-802	barrel domain in beta subunit of DNA dependent RNA-polymerase	barrel domain in beta subunit of DNA dependent RNA-polymerase	barrel domain in beta subunit of DNA dependent RNA-polymerase
e3h0gB7	B:803-839,B:964-1086	cradle loop barrel	RIFT-related	double psi
e3h0gB5	B:840-963	alpha/beta-Hammerhead/Barrel-sandwich hybrid	alpha/beta-Hammerhead/Barrel-sandwich hybrid	Single hybrid motif
e3h0gB4	B:1087-1210	C-terminal domain in beta subunit of DNA dependent RNA-polymerase	C-terminal domain in beta subunit of DNA dependent RNA-polymerase	C-terminal domain in beta subunit of DNA dependent RNA-polymerase
e3h0gC3	C:4-40,C:174-266	DCoH-like	RBP11-like subunits of RNA polymerase	RBP11-like subunits of RNA polymerase
e3h0gC4	C:41-173	Ribosomal protein TL5/L25 C-terminal domain-like	Insert subdomain of RNA polymerase alpha subunit	Insert subdomain of RNA polymerase alpha subunit
e3h0gD1	D:6-135	HhH/H2TH	SAM/DNA-glycosylase	SAM domain-like
e3h0gE2	E:4-138	Restriction endonuclease-like	Eukaryotic RPB5 N-terminal domain	Eukaryotic RPB5 N-terminal domain
e3h0gE1	E:139-210	RPB5-like RNA polymerase subunit	RPB5-like RNA polymerase subunit	RPB5-like RNA polymerase subunit
e3h0gF1	F:60-142	RPB6/omega subunit-like	RPB6/omega subunit-like	RPB6
e3h0gG4	G:3-69	Dodecin subunit-like	Flavin-binding protein dodecin-like	Flavin-binding protein dodecin-like
e3h0gG3	G:70-172	OB-fold	Nucleic acid-binding proteins	Nucleic acid-binding proteins
e3h0gH1	H:2-125	OB-fold	Nucleic acid-binding proteins	Nucleic acid-binding proteins
e3h0gI3	I:3-50	Rubredoxin-like	Rubredoxin-related	Rubredoxin-related
e3h0gI4	I:51-113	Rubredoxin-like	Rubredoxin-related	Rubredoxin-related
e3h0gJ1	J:1-64	HTH	RPB10	RPB10
e3h0gK1	K:1-119	DCoH-like	RBP11-like subunits of RNA polymerase	RBP11-like subunits of RNA polymerase
e3h0gL1	L:19-63	Rubredoxin-like	Rubredoxin-related	Rubredoxin-related
e3h0gM6	M:2-342	N-terminal domain in RNA-polymerase beta-prime subunit	N-terminal domain in RNA-polymerase beta-prime subunit	N-terminal domain in RNA-polymerase beta-prime subunit
e3h0gM5	M:343-380,M:442-525	cradle loop barrel	RIFT-related	double psi
e3h0gM1	M:381-441	MoeA-I/Ornithine decarboxylase-C/Reverse ferredoxin-like domain in RNA-polymerase	MoeA-I/Ornithine decarboxylase-C/Reverse ferredoxin-like domain in RNA-polymerase	MoeA-I/Ornithine decarboxylase-C/Reverse ferredoxin-like domain in RNA-polymerase
e3h0gM9	M:526-668	first helical domain in RNA-polymerase beta-prime subunit	first helical domain in RNA-polymerase beta-prime subunit	first helical domain in RNA-polymerase beta-prime subunit
e3h0gM7	M:669-877	second helical domain in RNA-polymerase beta-prime subunit	second helical domain in RNA-polymerase beta-prime subunit	second helical domain in RNA-polymerase beta-prime subunit
e3h0gM2	M:878-1062	helical domain in yeast RNA-polymerases	third helical domain in yeast RNA-polymerase II beta-prime subunit	third helical domain in yeast RNA-polymerase II beta-prime subunit
e3h0gM3	M:1063-1115,M:1337-1459,M:1491-1508	central helical domain in RNA-polymerase beta-prime subunit	central helical domain in RNA-polymerase beta-prime subunit	central helical domain in RNA-polymerase beta-prime subunit
e3h0gM4	M:1116-1144,M:1279-1336	ferredoxin-like domain in yeast RNA-polymerase beta-prime subunit	ferredoxin-like domain in yeast RNA-polymerase beta-prime subunit	ferredoxin-like domain in yeast RNA-polymerase beta-prime subunit
e3h0gM8	M:1145-1278	permuted ferredoxin-like domain in yeast RNA-polymerase beta-prime subunit	permuted ferredoxin-like domain in yeast RNA-polymerase beta-prime subunit	permuted ferredoxin-like domain in yeast RNA-polymerase beta-prime subunit
e3h0gN6	N:10-57,N:77-121,N:149-203,N:391-527	N-terminal domain in beta subunit of DNA dependent RNA-polymerase	N-terminal domain in beta subunit of DNA dependent RNA-polymerase	N-terminal domain in beta subunit of DNA dependent RNA-polymerase
e3h0gN3	N:204-390	insertion domain in beta subunit of DNA dependent RNA-polymerase	insertion domain in beta subunit of DNA dependent RNA-polymerase	insertion domain in beta subunit of DNA dependent RNA-polymerase
e3h0gN1	N:528-616	inserted a+b domain in yeast RNA polymerase beta subunit	inserted a+b domain in yeast RNA polymerase beta subunit	inserted a+b domain in yeast RNA polymerase beta subunit
e3h0gN7	N:617-802	barrel domain in beta subunit of DNA dependent RNA-polymerase	barrel domain in beta subunit of DNA dependent RNA-polymerase	barrel domain in beta subunit of DNA dependent RNA-polymerase
e3h0gN5	N:803-839,N:964-1086	cradle loop barrel	RIFT-related	double psi
e3h0gN2	N:840-963	alpha/beta-Hammerhead/Barrel-sandwich hybrid	alpha/beta-Hammerhead/Barrel-sandwich hybrid	Single hybrid motif
e3h0gN4	N:1087-1210	C-terminal domain in beta subunit of DNA dependent RNA-polymerase	C-terminal domain in beta subunit of DNA dependent RNA-polymerase	C-terminal domain in beta subunit of DNA dependent RNA-polymerase
e3h0gO1	O:4-36,O:174-266	DCoH-like	RBP11-like subunits of RNA polymerase	RBP11-like subunits of RNA polymerase
e3h0gO2	O:37-173	Ribosomal protein TL5/L25 C-terminal domain-like	Insert subdomain of RNA polymerase alpha subunit	Insert subdomain of RNA polymerase alpha subunit
e3h0gP1	P:6-135	HhH/H2TH	SAM/DNA-glycosylase	SAM domain-like
e3h0gQ2	Q:4-138	Restriction endonuclease-like	Eukaryotic RPB5 N-terminal domain	Eukaryotic RPB5 N-terminal domain
e3h0gQ1	Q:139-210	RPB5-like RNA polymerase subunit	RPB5-like RNA polymerase subunit	RPB5-like RNA polymerase subunit
e3h0gR1	R:60-142	RPB6/omega subunit-like	RPB6/omega subunit-like	RPB6
e3h0gS4	S:3-69	Dodecin subunit-like	Flavin-binding protein dodecin-like	Flavin-binding protein dodecin-like
e3h0gS3	S:70-172	OB-fold	Nucleic acid-binding proteins	Nucleic acid-binding proteins
e3h0gT1	T:2-125	OB-fold	Nucleic acid-binding proteins	Nucleic acid-binding proteins
e3h0gU3	U:3-50	Rubredoxin-like	Rubredoxin-related	Rubredoxin-related
e3h0gU4	U:51-113	Rubredoxin-like	Rubredoxin-related	Rubredoxin-related
e3h0gV1	V:1-64	HTH	RPB10	RPB10
e3h0gW1	W:1-119	DCoH-like	RBP11-like subunits of RNA polymerase	RBP11-like subunits of RNA polymerase
e3h0gX1	X:19-63	Rubredoxin-like	Rubredoxin-related	Rubredoxin-related

Structural contacts of domain e3h0gA8 of H-group "RIFT-related":

Sorry, the images are being generated.

The domain and its neighboring domains (both within the asymmetric unit and to crystallographic symmetry mates) are represented by spheres and linked by lines. Distances between the center of the domain and interfaces are shown for each contact.

Domain ID	Symmetry operator	H-group	Visualization
e3h0gB4	A:X,Y,Z->B:x,y,z	C-terminal domain in beta subunit of DNA dependent RNA-polymerase	Interaction Interface Pymol
e3h0gB7	A:X,Y,Z->B:x,y,z	RIFT-related	Interaction Interface Pymol
e3h0gF1	A:X,Y,Z->F:x,y,z	RPB6/omega subunit-like	Interaction Interface Pymol
e3h0gK1	A:X,Y,Z->K:x,y,z	RBP11-like subunits of RNA polymerase	Interaction Interface Pymol
e3h0gG4	A:X,Y,Z->G:x,y,z	Flavin-binding protein dodecin-like	Interaction Interface Pymol