ECOD: domain e3hkzB1

Domain ID e3hkzB1

A: a+b complex topology
X: alpha/beta-Hammerhead/Barrel-sandwich hybrid
H: alpha/beta-Hammerhead/Barrel-sandwich hybrid
T: Single hybrid motif
F: RNA_pol_Rpb2_6

UID:	001598248
Type:	Automatic domain
Parent:	e4by7B6
Range:	B:750-872
PDB:	3hkz
PDB Description:	DNA-directed RNA polymerase subunit B
UniProt:	Q980R1
Hsap BLAST neighbor:	P30876
Species:

Domains in the same chain:

Download Pymol

e3hkzB7	B:5-167,B:342-472	N-terminal domain in beta subunit of DNA dependent RNA-polymerase	N-terminal domain in beta subunit of DNA dependent RNA-polymerase	N-terminal domain in beta subunit of DNA dependent RNA-polymerase
e3hkzB2	B:168-341	insertion domain in beta subunit of DNA dependent RNA-polymerase	insertion domain in beta subunit of DNA dependent RNA-polymerase	insertion domain in beta subunit of DNA dependent RNA-polymerase
e3hkzB6	B:473-572	inserted a+b domain in yeast RNA polymerase beta subunit	inserted a+b domain in yeast RNA polymerase beta subunit	inserted a+b domain in yeast RNA polymerase beta subunit
e3hkzB4	B:573-712	barrel domain in beta subunit of DNA dependent RNA-polymerase	barrel domain in beta subunit of DNA dependent RNA-polymerase	barrel domain in beta subunit of DNA dependent RNA-polymerase
e3hkzB3	B:713-749,B:873-995	cradle loop barrel	RIFT-related	double psi
e3hkzB1	B:750-872	alpha/beta-Hammerhead/Barrel-sandwich hybrid	alpha/beta-Hammerhead/Barrel-sandwich hybrid	Single hybrid motif
e3hkzB5	B:996-1119	C-terminal domain in beta subunit of DNA dependent RNA-polymerase	C-terminal domain in beta subunit of DNA dependent RNA-polymerase	C-terminal domain in beta subunit of DNA dependent RNA-polymerase

Domains in the same PDB:

Structural contacts of domain e3hkzB1 of H-group "alpha/beta-Hammerhead/Barrel-sandwich hybrid":

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The domain and its neighboring domains (both within the asymmetric unit and to crystallographic symmetry mates) are represented by spheres and linked by lines. Distances between the center of the domain and interfaces are shown for each contact.

Domain ID	Symmetry operator	H-group	Visualization
e3hkzD2	B:x,y,z->D:X,Y,Z	Insert subdomain of RNA polymerase alpha subunit	Interaction Interface Pymol
e3hkzP1	B:x,y,z->P:X,Y,Z	Rubredoxin-related	Interaction Interface Pymol

e3hkzA4	A:4-306	N-terminal domain in RNA-polymerase beta-prime subunit	N-terminal domain in RNA-polymerase beta-prime subunit	N-terminal domain in RNA-polymerase beta-prime subunit
e3hkzA1	A:307-494	cradle loop barrel	RIFT-related	double psi
e3hkzA2	A:495-644	first helical domain in RNA-polymerase beta-prime subunit	first helical domain in RNA-polymerase beta-prime subunit	first helical domain in RNA-polymerase beta-prime subunit
e3hkzA3	A:645-879	second helical domain in RNA-polymerase beta-prime subunit	second helical domain in RNA-polymerase beta-prime subunit	second helical domain in RNA-polymerase beta-prime subunit
e3hkzB7	B:5-167,B:342-472	N-terminal domain in beta subunit of DNA dependent RNA-polymerase	N-terminal domain in beta subunit of DNA dependent RNA-polymerase	N-terminal domain in beta subunit of DNA dependent RNA-polymerase
e3hkzB2	B:168-341	insertion domain in beta subunit of DNA dependent RNA-polymerase	insertion domain in beta subunit of DNA dependent RNA-polymerase	insertion domain in beta subunit of DNA dependent RNA-polymerase
e3hkzB6	B:473-572	inserted a+b domain in yeast RNA polymerase beta subunit	inserted a+b domain in yeast RNA polymerase beta subunit	inserted a+b domain in yeast RNA polymerase beta subunit
e3hkzB4	B:573-712	barrel domain in beta subunit of DNA dependent RNA-polymerase	barrel domain in beta subunit of DNA dependent RNA-polymerase	barrel domain in beta subunit of DNA dependent RNA-polymerase
e3hkzB3	B:713-749,B:873-995	cradle loop barrel	RIFT-related	double psi
e3hkzB1	B:750-872	alpha/beta-Hammerhead/Barrel-sandwich hybrid	alpha/beta-Hammerhead/Barrel-sandwich hybrid	Single hybrid motif
e3hkzB5	B:996-1119	C-terminal domain in beta subunit of DNA dependent RNA-polymerase	C-terminal domain in beta subunit of DNA dependent RNA-polymerase	C-terminal domain in beta subunit of DNA dependent RNA-polymerase
e3hkzC1	C:11-65	helical domain in yeast RNA-polymerases	third helical domain in yeast RNA-polymerase II beta-prime subunit	third helical domain in yeast RNA-polymerase II beta-prime subunit
e3hkzC2	C:66-115,C:276-395	central helical domain in RNA-polymerase beta-prime subunit	central helical domain in RNA-polymerase beta-prime subunit	central helical domain in RNA-polymerase beta-prime subunit
e3hkzC3	C:116-147,C:233-275	ferredoxin-like domain in yeast RNA-polymerase beta-prime subunit	ferredoxin-like domain in yeast RNA-polymerase beta-prime subunit	ferredoxin-like domain in yeast RNA-polymerase beta-prime subunit
e3hkzC4	C:148-232	permuted ferredoxin-like domain in yeast RNA-polymerase beta-prime subunit	permuted ferredoxin-like domain in yeast RNA-polymerase beta-prime subunit	permuted ferredoxin-like domain in yeast RNA-polymerase beta-prime subunit
e3hkzD1	D:2-36,D:159-265	DCoH-like	RBP11-like subunits of RNA polymerase	RBP11-like subunits of RNA polymerase
e3hkzD2	D:37-158	Ribosomal protein TL5/L25 C-terminal domain-like	Insert subdomain of RNA polymerase alpha subunit	Insert subdomain of RNA polymerase alpha subunit
e3hkzE2	E:1-78	Dodecin subunit-like	Flavin-binding protein dodecin-like	Flavin-binding protein dodecin-like
e3hkzE1	E:79-180	OB-fold	Nucleic acid-binding proteins	Nucleic acid-binding proteins
e3hkzF1	F:1-89	HhH/H2TH	SAM/DNA-glycosylase	SAM domain-like
e3hkzG1	G:5-117	OB-fold	Nucleic acid-binding proteins	Nucleic acid-binding proteins
e3hkzH1	H:9-82	RPB5-like RNA polymerase subunit	RPB5-like RNA polymerase subunit	RPB5-like RNA polymerase subunit
e3hkzI3	I:4-306	N-terminal domain in RNA-polymerase beta-prime subunit	N-terminal domain in RNA-polymerase beta-prime subunit	N-terminal domain in RNA-polymerase beta-prime subunit
e3hkzI4	I:307-494	cradle loop barrel	RIFT-related	double psi
e3hkzI1	I:495-644	first helical domain in RNA-polymerase beta-prime subunit	first helical domain in RNA-polymerase beta-prime subunit	first helical domain in RNA-polymerase beta-prime subunit
e3hkzI2	I:645-879	second helical domain in RNA-polymerase beta-prime subunit	second helical domain in RNA-polymerase beta-prime subunit	second helical domain in RNA-polymerase beta-prime subunit
e3hkzJ4	J:5-167,J:342-472	N-terminal domain in beta subunit of DNA dependent RNA-polymerase	N-terminal domain in beta subunit of DNA dependent RNA-polymerase	N-terminal domain in beta subunit of DNA dependent RNA-polymerase
e3hkzJ7	J:168-341	insertion domain in beta subunit of DNA dependent RNA-polymerase	insertion domain in beta subunit of DNA dependent RNA-polymerase	insertion domain in beta subunit of DNA dependent RNA-polymerase
e3hkzJ5	J:473-572	inserted a+b domain in yeast RNA polymerase beta subunit	inserted a+b domain in yeast RNA polymerase beta subunit	inserted a+b domain in yeast RNA polymerase beta subunit
e3hkzJ6	J:573-712	barrel domain in beta subunit of DNA dependent RNA-polymerase	barrel domain in beta subunit of DNA dependent RNA-polymerase	barrel domain in beta subunit of DNA dependent RNA-polymerase
e3hkzJ1	J:713-749,J:873-995	cradle loop barrel	RIFT-related	double psi
e3hkzJ3	J:750-872	alpha/beta-Hammerhead/Barrel-sandwich hybrid	alpha/beta-Hammerhead/Barrel-sandwich hybrid	Single hybrid motif
e3hkzJ2	J:996-1119	C-terminal domain in beta subunit of DNA dependent RNA-polymerase	C-terminal domain in beta subunit of DNA dependent RNA-polymerase	C-terminal domain in beta subunit of DNA dependent RNA-polymerase
e3hkzK1	K:11-92	RPB6/omega subunit-like	RPB6/omega subunit-like	RPB6
e3hkzL1	L:1-92	DCoH-like	RBP11-like subunits of RNA polymerase	RBP11-like subunits of RNA polymerase
e3hkzM3	M:11-65	helical domain in yeast RNA-polymerases	third helical domain in yeast RNA-polymerase II beta-prime subunit	third helical domain in yeast RNA-polymerase II beta-prime subunit
e3hkzM4	M:66-115,M:276-395	central helical domain in RNA-polymerase beta-prime subunit	central helical domain in RNA-polymerase beta-prime subunit	central helical domain in RNA-polymerase beta-prime subunit
e3hkzM2	M:116-147,M:233-275	ferredoxin-like domain in yeast RNA-polymerase beta-prime subunit	ferredoxin-like domain in yeast RNA-polymerase beta-prime subunit	ferredoxin-like domain in yeast RNA-polymerase beta-prime subunit
e3hkzM1	M:148-232	permuted ferredoxin-like domain in yeast RNA-polymerase beta-prime subunit	permuted ferredoxin-like domain in yeast RNA-polymerase beta-prime subunit	permuted ferredoxin-like domain in yeast RNA-polymerase beta-prime subunit
e3hkzN1	N:1-64	HTH	RPB10	RPB10
e3hkzO2	O:2-36,O:159-265	DCoH-like	RBP11-like subunits of RNA polymerase	RBP11-like subunits of RNA polymerase
e3hkzO1	O:37-158	Ribosomal protein TL5/L25 C-terminal domain-like	Insert subdomain of RNA polymerase alpha subunit	Insert subdomain of RNA polymerase alpha subunit
e3hkzP1	P:6-48	Rubredoxin-like	Rubredoxin-related	Rubredoxin-related
e3hkzQ2	Q:1-78	Dodecin subunit-like	Flavin-binding protein dodecin-like	Flavin-binding protein dodecin-like
e3hkzQ1	Q:79-180	OB-fold	Nucleic acid-binding proteins	Nucleic acid-binding proteins
e3hkzR1	R:1-89	HhH/H2TH	SAM/DNA-glycosylase	SAM domain-like
e3hkzS1	S:5-117	OB-fold	Nucleic acid-binding proteins	Nucleic acid-binding proteins
e3hkzT1	T:9-82	RPB5-like RNA polymerase subunit	RPB5-like RNA polymerase subunit	RPB5-like RNA polymerase subunit
e3hkzU1	U:11-92	RPB6/omega subunit-like	RPB6/omega subunit-like	RPB6
e3hkzV1	V:1-92	DCoH-like	RBP11-like subunits of RNA polymerase	RBP11-like subunits of RNA polymerase
e3hkzW1	W:1-64	HTH	RPB10	RPB10
e3hkzX1	X:6-48	Rubredoxin-like	Rubredoxin-related	Rubredoxin-related
e3hkzY1	Y:38-82	YqgQ-like	YqgQ-like	YqgQ-like
e3hkzZ1	Z:38-82	YqgQ-like	YqgQ-like	YqgQ-like