Domain ID e3hkzI2

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  • A: a+b complex topology
  • X: second helical domain in RNA-polymerase beta-prime subunit
  • H: second helical domain in RNA-polymerase beta-prime subunit
  • T: second helical domain in RNA-polymerase beta-prime subunit
  • F: RNA_pol_Rpb1_5,RNA_pol_Rpb1_4
UID: 001710679
Type: Automatic domain
Parent: e1twfA10
Range: I:645-879
PDB: 3hkz
PDB Description: DNA-directed RNA polymerase subunit A'
UniProt: Q980R2
Hsap BLAST neighbor: P24928
Species:

Structure of domain e3hkzI2

Domains in the same chain:

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e3hkzI3 I:4-306 N-terminal domain in RNA-polymerase beta-prime subunit N-terminal domain in RNA-polymerase beta-prime subunit N-terminal domain in RNA-polymerase beta-prime subunit
e3hkzI4 I:307-494 cradle loop barrel RIFT-related double psi
e3hkzI1 I:495-644 first helical domain in RNA-polymerase beta-prime subunit first helical domain in RNA-polymerase beta-prime subunit first helical domain in RNA-polymerase beta-prime subunit
e3hkzI2 I:645-879 second helical domain in RNA-polymerase beta-prime subunit second helical domain in RNA-polymerase beta-prime subunit second helical domain in RNA-polymerase beta-prime subunit

Domains in the same PDB:

e3hkzA4 A:4-306 N-terminal domain in RNA-polymerase beta-prime subunit N-terminal domain in RNA-polymerase beta-prime subunit N-terminal domain in RNA-polymerase beta-prime subunit
e3hkzA1 A:307-494 cradle loop barrel RIFT-related double psi
e3hkzA2 A:495-644 first helical domain in RNA-polymerase beta-prime subunit first helical domain in RNA-polymerase beta-prime subunit first helical domain in RNA-polymerase beta-prime subunit
e3hkzA3 A:645-879 second helical domain in RNA-polymerase beta-prime subunit second helical domain in RNA-polymerase beta-prime subunit second helical domain in RNA-polymerase beta-prime subunit
e3hkzB7 B:5-167,B:342-472 N-terminal domain in beta subunit of DNA dependent RNA-polymerase N-terminal domain in beta subunit of DNA dependent RNA-polymerase N-terminal domain in beta subunit of DNA dependent RNA-polymerase
e3hkzB2 B:168-341 insertion domain in beta subunit of DNA dependent RNA-polymerase insertion domain in beta subunit of DNA dependent RNA-polymerase insertion domain in beta subunit of DNA dependent RNA-polymerase
e3hkzB6 B:473-572 inserted a+b domain in yeast RNA polymerase beta subunit inserted a+b domain in yeast RNA polymerase beta subunit inserted a+b domain in yeast RNA polymerase beta subunit
e3hkzB4 B:573-712 barrel domain in beta subunit of DNA dependent RNA-polymerase barrel domain in beta subunit of DNA dependent RNA-polymerase barrel domain in beta subunit of DNA dependent RNA-polymerase
e3hkzB3 B:713-749,B:873-995 cradle loop barrel RIFT-related double psi
e3hkzB1 B:750-872 alpha/beta-Hammerhead/Barrel-sandwich hybrid alpha/beta-Hammerhead/Barrel-sandwich hybrid Single hybrid motif
e3hkzB5 B:996-1119 C-terminal domain in beta subunit of DNA dependent RNA-polymerase C-terminal domain in beta subunit of DNA dependent RNA-polymerase C-terminal domain in beta subunit of DNA dependent RNA-polymerase
e3hkzC1 C:11-65 helical domain in yeast RNA-polymerases third helical domain in yeast RNA-polymerase II beta-prime subunit third helical domain in yeast RNA-polymerase II beta-prime subunit
e3hkzC2 C:66-115,C:276-395 central helical domain in RNA-polymerase beta-prime subunit central helical domain in RNA-polymerase beta-prime subunit central helical domain in RNA-polymerase beta-prime subunit
e3hkzC3 C:116-147,C:233-275 ferredoxin-like domain in yeast RNA-polymerase beta-prime subunit ferredoxin-like domain in yeast RNA-polymerase beta-prime subunit ferredoxin-like domain in yeast RNA-polymerase beta-prime subunit
e3hkzC4 C:148-232 permuted ferredoxin-like domain in yeast RNA-polymerase beta-prime subunit permuted ferredoxin-like domain in yeast RNA-polymerase beta-prime subunit permuted ferredoxin-like domain in yeast RNA-polymerase beta-prime subunit
e3hkzD1 D:2-36,D:159-265 DCoH-like RBP11-like subunits of RNA polymerase RBP11-like subunits of RNA polymerase
e3hkzD2 D:37-158 Ribosomal protein TL5/L25 C-terminal domain-like Insert subdomain of RNA polymerase alpha subunit Insert subdomain of RNA polymerase alpha subunit
e3hkzE2 E:1-78 Dodecin subunit-like Flavin-binding protein dodecin-like Flavin-binding protein dodecin-like
e3hkzE1 E:79-180 OB-fold Nucleic acid-binding proteins Nucleic acid-binding proteins
e3hkzF1 F:1-89 HhH/H2TH SAM/DNA-glycosylase SAM domain-like
e3hkzG1 G:5-117 OB-fold Nucleic acid-binding proteins Nucleic acid-binding proteins
e3hkzH1 H:9-82 RPB5-like RNA polymerase subunit RPB5-like RNA polymerase subunit RPB5-like RNA polymerase subunit
e3hkzI3 I:4-306 N-terminal domain in RNA-polymerase beta-prime subunit N-terminal domain in RNA-polymerase beta-prime subunit N-terminal domain in RNA-polymerase beta-prime subunit
e3hkzI4 I:307-494 cradle loop barrel RIFT-related double psi
e3hkzI1 I:495-644 first helical domain in RNA-polymerase beta-prime subunit first helical domain in RNA-polymerase beta-prime subunit first helical domain in RNA-polymerase beta-prime subunit
e3hkzI2 I:645-879 second helical domain in RNA-polymerase beta-prime subunit second helical domain in RNA-polymerase beta-prime subunit second helical domain in RNA-polymerase beta-prime subunit
e3hkzJ4 J:5-167,J:342-472 N-terminal domain in beta subunit of DNA dependent RNA-polymerase N-terminal domain in beta subunit of DNA dependent RNA-polymerase N-terminal domain in beta subunit of DNA dependent RNA-polymerase
e3hkzJ7 J:168-341 insertion domain in beta subunit of DNA dependent RNA-polymerase insertion domain in beta subunit of DNA dependent RNA-polymerase insertion domain in beta subunit of DNA dependent RNA-polymerase
e3hkzJ5 J:473-572 inserted a+b domain in yeast RNA polymerase beta subunit inserted a+b domain in yeast RNA polymerase beta subunit inserted a+b domain in yeast RNA polymerase beta subunit
e3hkzJ6 J:573-712 barrel domain in beta subunit of DNA dependent RNA-polymerase barrel domain in beta subunit of DNA dependent RNA-polymerase barrel domain in beta subunit of DNA dependent RNA-polymerase
e3hkzJ1 J:713-749,J:873-995 cradle loop barrel RIFT-related double psi
e3hkzJ3 J:750-872 alpha/beta-Hammerhead/Barrel-sandwich hybrid alpha/beta-Hammerhead/Barrel-sandwich hybrid Single hybrid motif
e3hkzJ2 J:996-1119 C-terminal domain in beta subunit of DNA dependent RNA-polymerase C-terminal domain in beta subunit of DNA dependent RNA-polymerase C-terminal domain in beta subunit of DNA dependent RNA-polymerase
e3hkzK1 K:11-92 RPB6/omega subunit-like RPB6/omega subunit-like RPB6
e3hkzL1 L:1-92 DCoH-like RBP11-like subunits of RNA polymerase RBP11-like subunits of RNA polymerase
e3hkzM3 M:11-65 helical domain in yeast RNA-polymerases third helical domain in yeast RNA-polymerase II beta-prime subunit third helical domain in yeast RNA-polymerase II beta-prime subunit
e3hkzM4 M:66-115,M:276-395 central helical domain in RNA-polymerase beta-prime subunit central helical domain in RNA-polymerase beta-prime subunit central helical domain in RNA-polymerase beta-prime subunit
e3hkzM2 M:116-147,M:233-275 ferredoxin-like domain in yeast RNA-polymerase beta-prime subunit ferredoxin-like domain in yeast RNA-polymerase beta-prime subunit ferredoxin-like domain in yeast RNA-polymerase beta-prime subunit
e3hkzM1 M:148-232 permuted ferredoxin-like domain in yeast RNA-polymerase beta-prime subunit permuted ferredoxin-like domain in yeast RNA-polymerase beta-prime subunit permuted ferredoxin-like domain in yeast RNA-polymerase beta-prime subunit
e3hkzN1 N:1-64 HTH RPB10 RPB10
e3hkzO2 O:2-36,O:159-265 DCoH-like RBP11-like subunits of RNA polymerase RBP11-like subunits of RNA polymerase
e3hkzO1 O:37-158 Ribosomal protein TL5/L25 C-terminal domain-like Insert subdomain of RNA polymerase alpha subunit Insert subdomain of RNA polymerase alpha subunit
e3hkzP1 P:6-48 Rubredoxin-like Rubredoxin-related Rubredoxin-related
e3hkzQ2 Q:1-78 Dodecin subunit-like Flavin-binding protein dodecin-like Flavin-binding protein dodecin-like
e3hkzQ1 Q:79-180 OB-fold Nucleic acid-binding proteins Nucleic acid-binding proteins
e3hkzR1 R:1-89 HhH/H2TH SAM/DNA-glycosylase SAM domain-like
e3hkzS1 S:5-117 OB-fold Nucleic acid-binding proteins Nucleic acid-binding proteins
e3hkzT1 T:9-82 RPB5-like RNA polymerase subunit RPB5-like RNA polymerase subunit RPB5-like RNA polymerase subunit
e3hkzU1 U:11-92 RPB6/omega subunit-like RPB6/omega subunit-like RPB6
e3hkzV1 V:1-92 DCoH-like RBP11-like subunits of RNA polymerase RBP11-like subunits of RNA polymerase
e3hkzW1 W:1-64 HTH RPB10 RPB10
e3hkzX1 X:6-48 Rubredoxin-like Rubredoxin-related Rubredoxin-related
e3hkzY1 Y:38-82 YqgQ-like YqgQ-like YqgQ-like
e3hkzZ1 Z:38-82 YqgQ-like YqgQ-like YqgQ-like

Structural contacts of domain e3hkzI2 of H-group "second helical domain in RNA-polymerase beta-prime subunit":

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The domain and its neighboring domains (both within the asymmetric unit and to crystallographic symmetry mates) are represented by spheres and linked by lines. Distances between the center of the domain and interfaces are shown for each contact.

Domain IDSymmetry operatorH-groupVisualization
e3hkzJ2 I:X,Y,Z->J:x,y,z C-terminal domain in beta subunit of DNA dependent RNA-polymerase Interaction Interface Pymol
e3hkzJ6 I:X,Y,Z->J:x,y,z barrel domain in beta subunit of DNA dependent RNA-polymerase Interaction Interface Pymol
e3hkzJ5 I:X,Y,Z->J:x,y,z inserted a+b domain in yeast RNA polymerase beta subunit Interaction Interface Pymol
e3hkzJ7 I:X,Y,Z->J:x,y,z insertion domain in beta subunit of DNA dependent RNA-polymerase Interaction Interface Pymol
e3hkzJ4 I:X,Y,Z->J:x,y,z N-terminal domain in beta subunit of DNA dependent RNA-polymerase Interaction Interface Pymol
e3hkzJ1 I:X,Y,Z->J:x,y,z RIFT-related Interaction Interface Pymol
e3hkzM2 I:X,Y,Z->M:x,y,z ferredoxin-like domain in yeast RNA-polymerase beta-prime subunit Interaction Interface Pymol
e3hkzM4 I:X,Y,Z->M:x,y,z central helical domain in RNA-polymerase beta-prime subunit Interaction Interface Pymol
e3hkzM3 I:X,Y,Z->M:x,y,z third helical domain in yeast RNA-polymerase II beta-prime subunit Interaction Interface Pymol
e3hkzS1 I:X,Y,Z->S:x,y,z Nucleic acid-binding proteins Interaction Interface Pymol
e3hkzU1 I:X,Y,Z->U:x,y,z RPB6/omega subunit-like Interaction Interface Pymol
e3hkzT1 I:X,Y,Z->T:x,y,z RPB5-like RNA polymerase subunit Interaction Interface Pymol
e3hkzB7 I:X-1,Y,Z-1->B:x,y,z N-terminal domain in beta subunit of DNA dependent RNA-polymerase Interaction Interface Pymol
e3hkzG1 I:-X,Y-1/2,-Z->G:x,y,z Nucleic acid-binding proteins Interaction Interface Pymol
e3hkzO2 I:X,Y,Z->O:x,y,z RBP11-like subunits of RNA polymerase Interaction Interface Pymol