Domain ID e3j5xL1

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  • A: beta barrels
  • X: OB-fold
  • H: Nucleic acid-binding proteins
  • T: Nucleic acid-binding proteins
  • F: Ribosom_S12_S23
UID: 001125052
Type: Automatic domain
Parent: e2uubL1
Range: L:1-123
PDB: 3j5x
PDB Description:
Hsap BLAST neighbor: O15235
Species:

Structure of domain e3j5xL1

Domains in the same chain:

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e3j5xL1 L:1-123 OB-fold Nucleic acid-binding proteins Nucleic acid-binding proteins

Domains in the same PDB:

e3j5xC2 C:1-105 Alpha-lytic protease prodomain-like KH-domains Prokaryotic type KH domain (KH-domain type II)
e3j5xC1 C:106-206 T-fold Ribosomal protein S3-C Ribosomal protein S3-C
e3j5xE2 E:9-76 dsRBD-like dsRNA-binding domain-like dsRNA-binding domain-like
e3j5xE1 E:77-158 Ribosomal protein S5 domain 2-like Ribosomal protein S5 domain 2-like Ribosomal protein S5 domain 2-like
e3j5xF1 F:1-100 Alpha-beta plaits Ribosomal protein S6 Ribosomal protein S6
e3j5xG1 G:1-151 Ribosomal protein S7 Ribosomal protein S7 Ribosomal protein S7
e3j5xH1 H:1-65 R3H domain-like Ribosomal protein S8, N-terminal domain Ribosomal protein S8, N-terminal domain
e3j5xH2 H:66-129 Ribosomal protein S8, C-terminal domain Ribosomal protein S8, C-terminal domain Ribosomal protein S8, C-terminal domain
e3j5xJ1 J:5-102 Alpha-beta plaits Ribosomal protein S10 Ribosomal protein S10
e3j5xK1 K:12-128 Ribonuclease H-like Ribonuclease H-like Ribonuclease H-like
e3j5xL1 L:1-123 OB-fold Nucleic acid-binding proteins Nucleic acid-binding proteins
e3j5xN1 N:1-101 Glucocorticoid receptor-like LIM domain-like LIM domain-like
e3j5xO1 O:1-88 S15/NS1 RNA-binding domain S15/NS1 RNA-binding domain S15/NS1 RNA-binding domain
e3j5xP1 P:1-82 Ribosomal protein S16 Ribosomal protein S16 Ribosomal protein S16
e3j5xR1 R:19-73 HTH HTH tri-helical
e3j5xT1 T:2-86 Spectrin repeat-like Ribosomal protein S20 Ribosomal protein S20
e3j5xU1 U:3-53 30S ribosomal protein S21 30S ribosomal protein S21 30S ribosomal protein S21
e3j5xZ9 Z:4-290 P-loop domains-like P-loop domains-related P-loop containing nucleoside triphosphate hydrolases
e3j5xZ11 Z:289-411 cradle loop barrel RIFT-related Alanine racemase-C
e3j5xZ12 Z:412-489 Alpha-beta plaits EF-G C-terminal domain-like EF-G C-terminal domain-like
e3j5xZ10 Z:490-610 Ribosomal protein S5 domain 2-like Ribosomal protein S5 domain 2-like Ribosomal protein S5 domain 2-like
e3j5xZ3 Z:611-700 Alpha-beta plaits EF-G C-terminal domain-like EF-G C-terminal domain-like

Structural contacts of domain e3j5xL1 of H-group "Nucleic acid-binding proteins":

The domain and its neighboring domains (both within the asymmetric unit and to crystallographic symmetry mates) are represented by spheres and linked by lines. Distances between the center of the domain and interfaces are shown for each contact.

Domain IDSymmetry operatorH-groupVisualization
e3j5xZ12 L:x,y,z->Z:X,Y,Z EF-G C-terminal domain-like Interaction Interface Pymol
e3j5xH2 L:X,Y,Z->H:x,y,z Ribosomal protein S8, C-terminal domain Interaction Interface Pymol