Domain ID e3j7aF1

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  • A: beta barrels
  • X: SH3
  • H: SH3
  • T: SH3
  • F: KOW,40S_S4_C
UID: 001313678
Type: Automatic domain
Parent: e8ovaA13
Range: F:176-258
PDB: 3j7a
PDB Description: 40S ribosomal protein eS4
UniProt: Q8IIU8
Hsap BLAST neighbor: P62701
Species:

Structure of domain e3j7aF1

Domains in the same chain:

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e3j7aF2 F:2-116 beta-Grasp Ubiquitin-related Alpha-L RNA-binding motif
e3j7aF3 F:117-175 OB-fold Nucleic acid-binding proteins Nucleic acid-binding proteins
e3j7aF1 F:176-258 SH3 SH3 SH3

Domains in the same PDB:

e3j7a11 1:3-122 Alpha-beta plaits Ribosomal proteins S24e, L23 and L15e Ribosomal proteins S24e, L23 and L15e
e3j7a21 2:35-102 HTH HTH winged
e3j7a31 3:2-96 Glucocorticoid receptor-like LIM domain-like LIM domain-like
e3j7a41 4:7-82 Rubredoxin-like Rubredoxin-related Rubredoxin-related
e3j7a51 5:2-66 OB-fold Nucleic acid-binding proteins Nucleic acid-binding proteins
e3j7a61 6:6-48 40S ribosomal protein S30 (S30e) 40S ribosomal protein S30 (S30e) 40S ribosomal protein S30 (S30e)
e3j7aB2 B:24-113 Ribosomal protein L25-like 40S ribosomal protein S3A N-terminal domain 40S ribosomal protein S3A N-terminal domain
e3j7aB1 B:114-233 T-fold 40S ribosomal protein S3A C-terminal domain 40S ribosomal protein S3A C-terminal domain
e3j7aC1 C:10-204 Flavodoxin-like Ribosomal protein S2/SIS domain Ribosomal protein S2/SIS domain
e3j7aD1 D:4-39,D:65-92 Alpha-lytic protease prodomain-like KH-domains Prokaryotic type KH domain (KH-domain type II)
e3j7aD2 D:93-216 T-fold Ribosomal protein S3-C Ribosomal protein S3-C
e3j7aE1 E:2-186 beta-Grasp Ubiquitin-related Alpha-L RNA-binding motif
e3j7aF2 F:2-116 beta-Grasp Ubiquitin-related Alpha-L RNA-binding motif
e3j7aF3 F:117-175 OB-fold Nucleic acid-binding proteins Nucleic acid-binding proteins
e3j7aF1 F:176-258 SH3 SH3 SH3
e3j7aG1 G:39-120 N-terminal region in 40S ribosomal protein rpS2 (S5p) N-terminal region in 40S ribosomal protein rpS2 (S5p) N-terminal region in 40S ribosomal protein rpS2 (S5p)
e3j7aG3 G:121-187 dsRBD-like dsRNA-binding domain-like dsRNA-binding domain-like
e3j7aG2 G:188-262 Ribosomal protein S5 domain 2-like Ribosomal protein S5 domain 2-like Ribosomal protein S5 domain 2-like
e3j7aH1 H:1-213 Ribosomal protein L25-like Ribosomal protein L25-like Ribosomal protein L25-like
e3j7aI1 I:7-195 Ribosomal protein S7 Ribosomal protein S7 Ribosomal protein S7
e3j7aJ1 J:3-102 Alpha-lytic protease prodomain-like 40S ribosomal protein S7-A 40S ribosomal protein S7-A
e3j7aJ2 J:103-190 Alpha-lytic protease prodomain-like 40S ribosomal protein S7-A 40S ribosomal protein S7-A
e3j7aK1 K:2-67 R3H domain-like Ribosomal protein S8, N-terminal domain Ribosomal protein S8, N-terminal domain
e3j7aK2 K:68-130 Ribosomal protein S8, C-terminal domain Ribosomal protein S8, C-terminal domain Ribosomal protein S8, C-terminal domain
e3j7aL1 L:5-120,L:161-218 Ribosomal protein L14-like Ribosomal protein L14-related Ribosomal protein L14-related
e3j7aM1 M:6-143 Ribosomal protein S5 domain 2-like Ribosomal protein S5 domain 2-like Ribosomal protein S5 domain 2-like
e3j7aN1 N:21-118 Alpha-beta plaits Ribosomal protein S10 Ribosomal protein S10
e3j7aO1 O:11-89 HTH HTH winged
e3j7aP1 P:25-151 Ribonuclease H-like Ribonuclease H-like Ribonuclease H-like
e3j7aQ1 Q:2-145 OB-fold Nucleic acid-binding proteins Nucleic acid-binding proteins
e3j7aR1 R:22-135 Bacillus chorismate mutase-like L30e-like L30e-like
e3j7aS1 S:12-139 HhH/H2TH H2TH H2TH
e3j7aT1 T:7-54 Glucocorticoid receptor-like LIM domain-like LIM domain-like
e3j7aU2 U:3-82 HTH 40S ribosomal protein S13 N-terminal domain 40S ribosomal protein S13 N-terminal domain
e3j7aU1 U:83-151 S15/NS1 RNA-binding domain S15/NS1 RNA-binding domain S15/NS1 RNA-binding domain
e3j7aV1 V:6-161 OB-fold Nucleic acid-binding proteins Nucleic acid-binding proteins
e3j7aW1 W:3-110 HTH HTH FF domain
e3j7aX1 X:21-123 Ribosomal protein S19 Ribosomal protein S19 Ribosomal protein S19
e3j7aY1 Y:15-168 HTH HTH winged
e3j7aZ1 Z:11-82 40S ribosomal protein rpS21 (S21e) 40S ribosomal protein rpS21 (S21e) 40S ribosomal protein rpS21 (S21e)

Structural contacts of domain e3j7aF1 of H-group "SH3":

The domain and its neighboring domains (both within the asymmetric unit and to crystallographic symmetry mates) are represented by spheres and linked by lines. Distances between the center of the domain and interfaces are shown for each contact.

Domain IDSymmetry operatorH-groupVisualization
e3j7aE1 F:X,Y,Z->E:x,y,z Ubiquitin-related Interaction Interface Pymol
e3j7aV1 F:x,y,z->V:X,Y,Z Nucleic acid-binding proteins Interaction Interface Pymol