ECOD: domain e3j7aK2

Domain ID e3j7aK2

A: a+b two layers
X: Ribosomal protein S8, C-terminal domain
H: Ribosomal protein S8, C-terminal domain
T: Ribosomal protein S8, C-terminal domain
F: Ribosomal_S8

UID:	001313688
Type:	Automatic domain
Parent:	e1i6uA2
Range:	K:68-130
PDB:	3j7a
PDB Description:	40S ribosomal protein uS8
UniProt:	O77395
Hsap BLAST neighbor:	P62244
Species:

Domains in the same chain:

Download Pymol

e3j7aK1	K:2-67	R3H domain-like	Ribosomal protein S8, N-terminal domain	Ribosomal protein S8, N-terminal domain
e3j7aK2	K:68-130	Ribosomal protein S8, C-terminal domain	Ribosomal protein S8, C-terminal domain	Ribosomal protein S8, C-terminal domain

Domains in the same PDB:

e3j7a11	1:3-122	Alpha-beta plaits	Ribosomal proteins S24e, L23 and L15e	Ribosomal proteins S24e, L23 and L15e
e3j7a21	2:35-102	HTH	HTH	winged
e3j7a31	3:2-96	Glucocorticoid receptor-like	LIM domain-like	LIM domain-like
e3j7a41	4:7-82	Rubredoxin-like	Rubredoxin-related	Rubredoxin-related
e3j7a51	5:2-66	OB-fold	Nucleic acid-binding proteins	Nucleic acid-binding proteins
e3j7a61	6:6-48	40S ribosomal protein S30 (S30e)	40S ribosomal protein S30 (S30e)	40S ribosomal protein S30 (S30e)
e3j7aB2	B:24-113	Ribosomal protein L25-like	40S ribosomal protein S3A N-terminal domain	40S ribosomal protein S3A N-terminal domain
e3j7aB1	B:114-233	T-fold	40S ribosomal protein S3A C-terminal domain	40S ribosomal protein S3A C-terminal domain
e3j7aC1	C:10-204	Flavodoxin-like	Ribosomal protein S2/SIS domain	Ribosomal protein S2/SIS domain
e3j7aD1	D:4-39,D:65-92	Alpha-lytic protease prodomain-like	KH-domains	Prokaryotic type KH domain (KH-domain type II)
e3j7aD2	D:93-216	T-fold	Ribosomal protein S3-C	Ribosomal protein S3-C
e3j7aE1	E:2-186	beta-Grasp	Ubiquitin-related	Alpha-L RNA-binding motif
e3j7aF2	F:2-116	beta-Grasp	Ubiquitin-related	Alpha-L RNA-binding motif
e3j7aF3	F:117-175	OB-fold	Nucleic acid-binding proteins	Nucleic acid-binding proteins
e3j7aF1	F:176-258	SH3	SH3	SH3
e3j7aG1	G:39-120	N-terminal region in 40S ribosomal protein rpS2 (S5p)	N-terminal region in 40S ribosomal protein rpS2 (S5p)	N-terminal region in 40S ribosomal protein rpS2 (S5p)
e3j7aG3	G:121-187	dsRBD-like	dsRNA-binding domain-like	dsRNA-binding domain-like
e3j7aG2	G:188-262	Ribosomal protein S5 domain 2-like	Ribosomal protein S5 domain 2-like	Ribosomal protein S5 domain 2-like
e3j7aH1	H:1-213	Ribosomal protein L25-like	Ribosomal protein L25-like	Ribosomal protein L25-like
e3j7aI1	I:7-195	Ribosomal protein S7	Ribosomal protein S7	Ribosomal protein S7
e3j7aJ1	J:3-102	Alpha-lytic protease prodomain-like	40S ribosomal protein S7-A	40S ribosomal protein S7-A
e3j7aJ2	J:103-190	Alpha-lytic protease prodomain-like	40S ribosomal protein S7-A	40S ribosomal protein S7-A
e3j7aK1	K:2-67	R3H domain-like	Ribosomal protein S8, N-terminal domain	Ribosomal protein S8, N-terminal domain
e3j7aK2	K:68-130	Ribosomal protein S8, C-terminal domain	Ribosomal protein S8, C-terminal domain	Ribosomal protein S8, C-terminal domain
e3j7aL1	L:5-120,L:161-218	Ribosomal protein L14-like	Ribosomal protein L14-related	Ribosomal protein L14-related
e3j7aM1	M:6-143	Ribosomal protein S5 domain 2-like	Ribosomal protein S5 domain 2-like	Ribosomal protein S5 domain 2-like
e3j7aN1	N:21-118	Alpha-beta plaits	Ribosomal protein S10	Ribosomal protein S10
e3j7aO1	O:11-89	HTH	HTH	winged
e3j7aP1	P:25-151	Ribonuclease H-like	Ribonuclease H-like	Ribonuclease H-like
e3j7aQ1	Q:2-145	OB-fold	Nucleic acid-binding proteins	Nucleic acid-binding proteins
e3j7aR1	R:22-135	Bacillus chorismate mutase-like	L30e-like	L30e-like
e3j7aS1	S:12-139	HhH/H2TH	H2TH	H2TH
e3j7aT1	T:7-54	Glucocorticoid receptor-like	LIM domain-like	LIM domain-like
e3j7aU2	U:3-82	HTH	40S ribosomal protein S13 N-terminal domain	40S ribosomal protein S13 N-terminal domain
e3j7aU1	U:83-151	S15/NS1 RNA-binding domain	S15/NS1 RNA-binding domain	S15/NS1 RNA-binding domain
e3j7aV1	V:6-161	OB-fold	Nucleic acid-binding proteins	Nucleic acid-binding proteins
e3j7aW1	W:3-110	HTH	HTH	FF domain
e3j7aX1	X:21-123	Ribosomal protein S19	Ribosomal protein S19	Ribosomal protein S19
e3j7aY1	Y:15-168	HTH	HTH	winged
e3j7aZ1	Z:11-82	40S ribosomal protein rpS21 (S21e)	40S ribosomal protein rpS21 (S21e)	40S ribosomal protein rpS21 (S21e)

Structural contacts of domain e3j7aK2 of H-group "Ribosomal protein S8, C-terminal domain":

The domain and its neighboring domains (both within the asymmetric unit and to crystallographic symmetry mates) are represented by spheres and linked by lines. Distances between the center of the domain and interfaces are shown for each contact.

Domain ID	Symmetry operator	H-group	Visualization
e3j7aG2	K:X,Y,Z->G:x,y,z	Ribosomal protein S5 domain 2-like	Interaction Interface Pymol
e3j7aG2	K:X,Y,Z->G:x,y,z	Ribosomal protein S5 domain 2-like	Interaction Interface Pymol
e3j7aV1	K:x,y,z->V:X,Y,Z	Nucleic acid-binding proteins	Interaction Interface Pymol
e3j7aQ1	K:x,y,z->Q:X,Y,Z	Nucleic acid-binding proteins	Interaction Interface Pymol
e3j7aE1	K:X,Y,Z->E:x,y,z	Ubiquitin-related	Interaction Interface Pymol