Domain ID e3k70E6

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  • A: a/b three-layered sandwiches
  • X: Restriction endonuclease-like
  • H: Restriction endonuclease-like
  • T: Restriction endonuclease-like
  • F: PDDEXK_1
UID: 001230978
Type: Automatic domain
Parent: e1w36B3
Range: E:881-1174
Ligands: CA
PDB: 3k70
PDB Description: EXODEOXYRIBONUCLEASE V BETA CHAIN
UniProt: P08394
Species:

Structure of domain e3k70E6

Domains in the same chain:

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e3k70E4 E:3-469 P-loop domains-like P-loop domains-related P-loop containing nucleoside triphosphate hydrolases
e3k70E5 E:470-880 P-loop domains-like P-loop domains-related P-loop containing nucleoside triphosphate hydrolases
e3k70E6 E:881-1174 Restriction endonuclease-like Restriction endonuclease-like Restriction endonuclease-like

Domains in the same PDB:

e3k70B7 B:3-469 P-loop domains-like P-loop domains-related P-loop containing nucleoside triphosphate hydrolases
e3k70B8 B:470-880 P-loop domains-like P-loop domains-related P-loop containing nucleoside triphosphate hydrolases
e3k70B9 B:881-1174 Restriction endonuclease-like Restriction endonuclease-like Restriction endonuclease-like
e3k70C1 C:1-347 P-loop domains-like P-loop domains-related P-loop containing nucleoside triphosphate hydrolases
e3k70C2 C:348-817 P-loop domains-like P-loop domains-related P-loop containing nucleoside triphosphate hydrolases
e3k70C3 C:818-1121 Restriction endonuclease-like Restriction endonuclease-like Restriction endonuclease-like
e3k70D3 D:1-109 HTH HTH winged
e3k70D5 D:110-349 P-loop domains-like P-loop domains-related P-loop containing nucleoside triphosphate hydrolases
e3k70D4 D:350-466,D:524-606 P-loop domains-like P-loop domains-related P-loop containing nucleoside triphosphate hydrolases
e3k70E4 E:3-469 P-loop domains-like P-loop domains-related P-loop containing nucleoside triphosphate hydrolases
e3k70E5 E:470-880 P-loop domains-like P-loop domains-related P-loop containing nucleoside triphosphate hydrolases
e3k70E6 E:881-1174 Restriction endonuclease-like Restriction endonuclease-like Restriction endonuclease-like
e3k70F1 F:1-347 P-loop domains-like P-loop domains-related P-loop containing nucleoside triphosphate hydrolases
e3k70F2 F:348-817 P-loop domains-like P-loop domains-related P-loop containing nucleoside triphosphate hydrolases
e3k70F3 F:818-1121 Restriction endonuclease-like Restriction endonuclease-like Restriction endonuclease-like
e3k70G3 G:1-109 HTH HTH winged
e3k70G5 G:110-349 P-loop domains-like P-loop domains-related P-loop containing nucleoside triphosphate hydrolases
e3k70G4 G:350-466,G:524-606 P-loop domains-like P-loop domains-related P-loop containing nucleoside triphosphate hydrolases

Structural contacts of domain e3k70E6 of H-group "Restriction endonuclease-like":

The domain and its neighboring domains (both within the asymmetric unit and to crystallographic symmetry mates) are represented by spheres and linked by lines. Distances between the center of the domain and interfaces are shown for each contact.

Domain IDSymmetry operatorH-groupVisualization
e3k70F2 E:X,Y,Z->F:x,y,z P-loop domains-related Interaction Interface Pymol
e3k70F1 E:X,Y,Z->F:x,y,z P-loop domains-related Interaction Interface Pymol
e3k70B8 E:x,y,z->B:X,Y,Z P-loop domains-related Interaction Interface Pymol
e3k70B9 E:x,y,z->B:X,Y,Z Restriction endonuclease-like Interaction Interface Pymol
e3k70D5 E:X-1/2,-Y-1/2,-Z->D:x,y,z P-loop domains-related Interaction Interface Pymol
e3k70C3 E:X-1/2,-Y-1/2,-Z->C:x,y,z Restriction endonuclease-like Interaction Interface Pymol
e3k70E5 E:X-1/2,-Y-1/2,-Z->E:x,y,z P-loop domains-related Interaction Interface Pymol