Domain ID e3knmR1

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  • A: a+b two layers
  • X: Enolase-N/ribosomal protein
  • H: Prokaryotic ribosomal protein L17
  • T: Prokaryotic ribosomal protein L17
  • F: Ribosomal_L17
UID: 000384170
Type: Automatic domain
Parent: e1gd8A1
Range: R:2-118
Ligands: MG
PDB: 3knm
PDB Description:
Hsap BLAST neighbor: Q9NRX2
Species:

Structure of domain e3knmR1

Domains in the same chain:

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e3knmR1 R:2-118 Enolase-N/ribosomal protein Prokaryotic ribosomal protein L17 Prokaryotic ribosomal protein L17

Domains in the same PDB:

e3knm01 0:2-85 alpha/beta-Hammerhead/Barrel-sandwich hybrid alpha/beta-Hammerhead/Barrel-sandwich hybrid Ribosomal L27 protein
e3knm11 1:3-96 Ribosomal protein bL28-related Ribosomal protein bL28-related Ribosomal protein L28
e3knm21 2:2-72 Long alpha-hairpin Ribosomal protein L29 (L29p) Ribosomal protein L29 (L29p)
e3knm31 3:1-60 Ribosomal protein L30p/L7e Ribosomal protein L30p/L7e Ribosomal protein L30p/L7e
e3knm41 4:36-85 Ribosomal protein L31p Ribosomal protein L31p Ribosomal protein L31p
e3knm51 5:2-60 Rubredoxin-like Rubredoxin-related Rubredoxin-related
e3knm61 6:6-53 Rubredoxin-like Rubredoxin-related Rubredoxin-related
e3knm71 7:1-49 50S ribosomal protein L34 50S ribosomal protein L34 50S ribosomal protein L34
e3knm81 8:2-65 Ribosomal protein L35p Ribosomal protein L35p Ribosomal protein L35p
e3knm91 9:2-37 Ribosomal protein L36 Ribosomal protein L36 Ribosomal protein L36
e3knmC1 C:18-66,C:159-224 a+b domain in Ribosomal protein L1 a+b domain in Ribosomal protein L1 a+b domain in Ribosomal protein L1
e3knmC2 C:67-158 Flavodoxin-like Rossmann-like domain in Ribosomal protein L1 Rossmann-like domain in Ribosomal protein L1
e3knmD1 D:2-126 OB-fold Nucleic acid-binding proteins Nucleic acid-binding proteins
e3knmD2 D:127-273 SH3 SH3 SH3
e3knmF1 F:3-208 Ribosomal protein L4 Ribosomal protein L4 Ribosomal protein L4
e3knmG1 G:2-182 Ribosomal protein L5 Ribosomal protein L5 Ribosomal protein L5
e3knmH4 H:8-82 Ribosomal protein L6 Ribosomal protein L6 Ribosomal protein L6
e3knmH3 H:83-168 Ribosomal protein L6 Ribosomal protein L6 Ribosomal protein L6
e3knmI2 I:1-53 L9 N-domain-like L9 N-domain-like L9 N-domain-like
e3knmI1 I:54-146 Ribosomal protein L9 C-domain Ribosomal protein L9 C-domain Ribosomal protein L9 C-domain
e3knmN1 N:1-139 Ribosomal protein L13/L15p/L18e/L32e Ribosomal protein L13 and L16-A Ribosomal protein L13 and L16-A
e3knmO1 O:1-122 Ribosomal protein L14-like Ribosomal protein L14-related Ribosomal protein L14-related
e3knmR1 R:2-118 Enolase-N/ribosomal protein Prokaryotic ribosomal protein L17 Prokaryotic ribosomal protein L17
e3knmU1 U:2-118 PABP domain-like Ribosomal protein L20 Ribosomal protein L20
e3knmV1 V:1-101 Ribosomal protein L21p Ribosomal protein L21p Ribosomal protein L21p
e3knmW1 W:1-113 Enolase-N/ribosomal protein Ribosomal protein L22 Ribosomal protein L22
e3knmX1 X:3-95 Alpha-beta plaits Ribosomal proteins S24e, L23 and L15e Ribosomal proteins S24e, L23 and L15e
e3knmY1 Y:2-102 SH3 SH3 SH3
e3knmZ1 Z:2-92 Ribosomal protein L25-like Ribosomal protein L25-like Ribosomal protein L25-like
e3knmZ2 Z:92-178 Ribosomal protein TL5/L25 C-terminal domain-like Ribosomal protein TL5/L25 C-terminal domain-related Ribosomal protein TL5/L25 C-terminal domain-related

Structural contacts of domain e3knmR1 of H-group "Prokaryotic ribosomal protein L17":

The domain and its neighboring domains (both within the asymmetric unit and to crystallographic symmetry mates) are represented by spheres and linked by lines. Distances between the center of the domain and interfaces are shown for each contact.

Domain IDSymmetry operatorH-groupVisualization
e3knm51 R:X,Y,Z->5:x,y,z Rubredoxin-related Interaction Interface Pymol
e3knmW1 R:X,Y,Z->W:x,y,z Ribosomal protein L22 Interaction Interface Pymol
e3knmW1 R:x,y,z->E:X,Y,Z Ribosomal protein L22 Interaction Interface Pymol