Domain ID e3l7zB1

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  • A: a+b two layers
  • X: Ribonuclease PH domain 2-like
  • H: Ribonuclease PH domain 2
  • T: Ribonuclease PH domain 2
  • F: RNase_PH_C
UID: 000139653
Type: Automatic domain
Parent: e2je6B1
Range: B:153-238
Ligands: SO4
PDB: 3l7z
PDB Description: Probable exosome complex exonuclease 1
UniProt: Q9UXC2
Hsap BLAST neighbor: Q9NPD3
Species: Sulfolobus solfataricus

Structure of domain e3l7zB1

Domains in the same chain:

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e3l7zB2 B:7-152 Ribosomal protein S5 domain 2-like Ribosomal protein S5 domain 2-like Ribosomal protein S5 domain 2-like
e3l7zB1 B:153-238 Ribonuclease PH domain 2-like Ribonuclease PH domain 2 Ribonuclease PH domain 2

Domains in the same PDB:

e3l7zA3 A:1-184 Ribosomal protein S5 domain 2-like Ribosomal protein S5 domain 2-like Ribosomal protein S5 domain 2-like
e3l7zA4 A:185-271 Ribonuclease PH domain 2-like Ribonuclease PH domain 2 Ribonuclease PH domain 2
e3l7zB2 B:7-152 Ribosomal protein S5 domain 2-like Ribosomal protein S5 domain 2-like Ribosomal protein S5 domain 2-like
e3l7zB1 B:153-238 Ribonuclease PH domain 2-like Ribonuclease PH domain 2 Ribonuclease PH domain 2
e3l7zC5 C:7-65 alpha/beta-Hammerhead/Barrel-sandwich hybrid alpha/beta-Hammerhead/Barrel-sandwich hybrid Ribosomal L27 protein
e3l7zC4 C:66-152 OB-fold Nucleic acid-binding proteins Nucleic acid-binding proteins
e3l7zC2 C:153-228 Alpha-lytic protease prodomain-like KH-domains Eukaryotic type KH-domain (KH-domain type I)
e3l7zD3 D:1-184 Ribosomal protein S5 domain 2-like Ribosomal protein S5 domain 2-like Ribosomal protein S5 domain 2-like
e3l7zD4 D:185-271 Ribonuclease PH domain 2-like Ribonuclease PH domain 2 Ribonuclease PH domain 2
e3l7zE2 E:2-152 Ribosomal protein S5 domain 2-like Ribosomal protein S5 domain 2-like Ribosomal protein S5 domain 2-like
e3l7zE1 E:153-238 Ribonuclease PH domain 2-like Ribonuclease PH domain 2 Ribonuclease PH domain 2
e3l7zF4 F:10-65 alpha/beta-Hammerhead/Barrel-sandwich hybrid alpha/beta-Hammerhead/Barrel-sandwich hybrid Ribosomal L27 protein
e3l7zF1 F:66-152 OB-fold Nucleic acid-binding proteins Nucleic acid-binding proteins
e3l7zF5 F:153-241 Alpha-lytic protease prodomain-like KH-domains Eukaryotic type KH-domain (KH-domain type I)
e3l7zG3 G:1-184 Ribosomal protein S5 domain 2-like Ribosomal protein S5 domain 2-like Ribosomal protein S5 domain 2-like
e3l7zG4 G:185-270 Ribonuclease PH domain 2-like Ribonuclease PH domain 2 Ribonuclease PH domain 2
e3l7zH2 H:5-152 Ribosomal protein S5 domain 2-like Ribosomal protein S5 domain 2-like Ribosomal protein S5 domain 2-like
e3l7zH1 H:153-238 Ribonuclease PH domain 2-like Ribonuclease PH domain 2 Ribonuclease PH domain 2
e3l7zI3 I:8-65 alpha/beta-Hammerhead/Barrel-sandwich hybrid alpha/beta-Hammerhead/Barrel-sandwich hybrid Ribosomal L27 protein
e3l7zI1 I:66-152 OB-fold Nucleic acid-binding proteins Nucleic acid-binding proteins
e3l7zI2 I:153-226 Alpha-lytic protease prodomain-like KH-domains Eukaryotic type KH-domain (KH-domain type I)

Structural contacts of domain e3l7zB1 of H-group "Ribonuclease PH domain 2":

The domain and its neighboring domains (both within the asymmetric unit and to crystallographic symmetry mates) are represented by spheres and linked by lines. Distances between the center of the domain and interfaces are shown for each contact.

Domain IDSymmetry operatorH-groupVisualization
e3l7zA4 B:x,y,z->A:X,Y,Z Ribonuclease PH domain 2 Interaction Interface Pymol
e3l7zA3 B:x,y,z->A:X,Y,Z Ribosomal protein S5 domain 2-like Interaction Interface Pymol
e3l7zC5 B:X,Y,Z->C:x,y,z alpha/beta-Hammerhead/Barrel-sandwich hybrid Interaction Interface Pymol
e3l7zC2 B:X,Y,Z->C:x,y,z KH-domains Interaction Interface Pymol
e3l7zF5 B:-X,Y,-Z->F:x,y,z KH-domains Interaction Interface Pymol
e3l7zI3 B:x,y,z->I:X-1/2,Y-1/2,Z alpha/beta-Hammerhead/Barrel-sandwich hybrid Interaction Interface Pymol