ECOD: domain e3l7zE2

Domain ID e3l7zE2

A: a+b two layers
X: Ribosomal protein S5 domain 2-like
H: Ribosomal protein S5 domain 2-like
T: Ribosomal protein S5 domain 2-like
F: RNase_PH

UID:	000394091
Type:	Automatic domain
Parent:	e2je6B2
Range:	E:2-152
Ligands:	SO4
PDB:	3l7z
PDB Description:	Probable exosome complex exonuclease 1
UniProt:	Q9UXC2
Hsap BLAST neighbor:	Q9NPD3
Species:	Sulfolobus solfataricus

Domains in the same chain:

Download Pymol

e3l7zE2	E:2-152	Ribosomal protein S5 domain 2-like	Ribosomal protein S5 domain 2-like	Ribosomal protein S5 domain 2-like
e3l7zE1	E:153-238	Ribonuclease PH domain 2-like	Ribonuclease PH domain 2	Ribonuclease PH domain 2

Domains in the same PDB:

e3l7zA3	A:1-184	Ribosomal protein S5 domain 2-like	Ribosomal protein S5 domain 2-like	Ribosomal protein S5 domain 2-like
e3l7zA4	A:185-271	Ribonuclease PH domain 2-like	Ribonuclease PH domain 2	Ribonuclease PH domain 2
e3l7zB2	B:7-152	Ribosomal protein S5 domain 2-like	Ribosomal protein S5 domain 2-like	Ribosomal protein S5 domain 2-like
e3l7zB1	B:153-238	Ribonuclease PH domain 2-like	Ribonuclease PH domain 2	Ribonuclease PH domain 2
e3l7zC5	C:7-65	alpha/beta-Hammerhead/Barrel-sandwich hybrid	alpha/beta-Hammerhead/Barrel-sandwich hybrid	Ribosomal L27 protein
e3l7zC4	C:66-152	OB-fold	Nucleic acid-binding proteins	Nucleic acid-binding proteins
e3l7zC2	C:153-228	Alpha-lytic protease prodomain-like	KH-domains	Eukaryotic type KH-domain (KH-domain type I)
e3l7zD3	D:1-184	Ribosomal protein S5 domain 2-like	Ribosomal protein S5 domain 2-like	Ribosomal protein S5 domain 2-like
e3l7zD4	D:185-271	Ribonuclease PH domain 2-like	Ribonuclease PH domain 2	Ribonuclease PH domain 2
e3l7zE2	E:2-152	Ribosomal protein S5 domain 2-like	Ribosomal protein S5 domain 2-like	Ribosomal protein S5 domain 2-like
e3l7zE1	E:153-238	Ribonuclease PH domain 2-like	Ribonuclease PH domain 2	Ribonuclease PH domain 2
e3l7zF4	F:10-65	alpha/beta-Hammerhead/Barrel-sandwich hybrid	alpha/beta-Hammerhead/Barrel-sandwich hybrid	Ribosomal L27 protein
e3l7zF1	F:66-152	OB-fold	Nucleic acid-binding proteins	Nucleic acid-binding proteins
e3l7zF5	F:153-241	Alpha-lytic protease prodomain-like	KH-domains	Eukaryotic type KH-domain (KH-domain type I)
e3l7zG3	G:1-184	Ribosomal protein S5 domain 2-like	Ribosomal protein S5 domain 2-like	Ribosomal protein S5 domain 2-like
e3l7zG4	G:185-270	Ribonuclease PH domain 2-like	Ribonuclease PH domain 2	Ribonuclease PH domain 2
e3l7zH2	H:5-152	Ribosomal protein S5 domain 2-like	Ribosomal protein S5 domain 2-like	Ribosomal protein S5 domain 2-like
e3l7zH1	H:153-238	Ribonuclease PH domain 2-like	Ribonuclease PH domain 2	Ribonuclease PH domain 2
e3l7zI3	I:8-65	alpha/beta-Hammerhead/Barrel-sandwich hybrid	alpha/beta-Hammerhead/Barrel-sandwich hybrid	Ribosomal L27 protein
e3l7zI1	I:66-152	OB-fold	Nucleic acid-binding proteins	Nucleic acid-binding proteins
e3l7zI2	I:153-226	Alpha-lytic protease prodomain-like	KH-domains	Eukaryotic type KH-domain (KH-domain type I)

Structural contacts of domain e3l7zE2 of H-group "Ribosomal protein S5 domain 2-like":

The domain and its neighboring domains (both within the asymmetric unit and to crystallographic symmetry mates) are represented by spheres and linked by lines. Distances between the center of the domain and interfaces are shown for each contact.

Domain ID	Symmetry operator	H-group	Visualization
e3l7zD4	E:x,y,z->D:X,Y,Z	Ribonuclease PH domain 2	Interaction Interface Pymol
e3l7zD3	E:x,y,z->D:X,Y,Z	Ribosomal protein S5 domain 2-like	Interaction Interface Pymol
e3l7zF4	E:X,Y,Z->F:x,y,z	alpha/beta-Hammerhead/Barrel-sandwich hybrid	Interaction Interface Pymol
e3l7zF1	E:X,Y,Z->F:x,y,z	Nucleic acid-binding proteins	Interaction Interface Pymol
e3l7zA3	E:x,y,z->A:X,Y,Z	Ribosomal protein S5 domain 2-like	Interaction Interface Pymol
e3l7zA4	E:x,y,z->A:X,Y,Z	Ribonuclease PH domain 2	Interaction Interface Pymol
e3l7zC5	E:X-1/2,Y+1/2,Z->C:x,y,z	alpha/beta-Hammerhead/Barrel-sandwich hybrid	Interaction Interface Pymol
e3l7zC2	E:X-1/2,Y+1/2,Z->C:x,y,z	KH-domains	Interaction Interface Pymol
e3l7zF1	E:x,y,z->F:-X+1/2,Y-1/2,-Z	Nucleic acid-binding proteins	Interaction Interface Pymol
e3l7zI1	E:X,Y,Z->I:x,y,z	Nucleic acid-binding proteins	Interaction Interface Pymol
e3l7zB2	E:x,y,z->B:X,Y,Z	Ribosomal protein S5 domain 2-like	Interaction Interface Pymol