Domain ID e3l7zG3

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  • A: a+b two layers
  • X: Ribosomal protein S5 domain 2-like
  • H: Ribosomal protein S5 domain 2-like
  • T: Ribosomal protein S5 domain 2-like
  • F: RNase_PH
UID: 001208113
Type: Automatic domain
Parent: e2nn6A2
Range: G:1-184
PDB: 3l7z
PDB Description: Probable exosome complex exonuclease 2
UniProt: Q9UXC0
Hsap BLAST neighbor: Q96B26
Species: Sulfolobus solfataricus

Structure of domain e3l7zG3

Domains in the same chain:

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e3l7zG3 G:1-184 Ribosomal protein S5 domain 2-like Ribosomal protein S5 domain 2-like Ribosomal protein S5 domain 2-like
e3l7zG4 G:185-270 Ribonuclease PH domain 2-like Ribonuclease PH domain 2 Ribonuclease PH domain 2

Domains in the same PDB:

e3l7zA3 A:1-184 Ribosomal protein S5 domain 2-like Ribosomal protein S5 domain 2-like Ribosomal protein S5 domain 2-like
e3l7zA4 A:185-271 Ribonuclease PH domain 2-like Ribonuclease PH domain 2 Ribonuclease PH domain 2
e3l7zB2 B:7-152 Ribosomal protein S5 domain 2-like Ribosomal protein S5 domain 2-like Ribosomal protein S5 domain 2-like
e3l7zB1 B:153-238 Ribonuclease PH domain 2-like Ribonuclease PH domain 2 Ribonuclease PH domain 2
e3l7zC5 C:7-65 alpha/beta-Hammerhead/Barrel-sandwich hybrid alpha/beta-Hammerhead/Barrel-sandwich hybrid Ribosomal L27 protein
e3l7zC4 C:66-152 OB-fold Nucleic acid-binding proteins Nucleic acid-binding proteins
e3l7zC2 C:153-228 Alpha-lytic protease prodomain-like KH-domains Eukaryotic type KH-domain (KH-domain type I)
e3l7zD3 D:1-184 Ribosomal protein S5 domain 2-like Ribosomal protein S5 domain 2-like Ribosomal protein S5 domain 2-like
e3l7zD4 D:185-271 Ribonuclease PH domain 2-like Ribonuclease PH domain 2 Ribonuclease PH domain 2
e3l7zE2 E:2-152 Ribosomal protein S5 domain 2-like Ribosomal protein S5 domain 2-like Ribosomal protein S5 domain 2-like
e3l7zE1 E:153-238 Ribonuclease PH domain 2-like Ribonuclease PH domain 2 Ribonuclease PH domain 2
e3l7zF4 F:10-65 alpha/beta-Hammerhead/Barrel-sandwich hybrid alpha/beta-Hammerhead/Barrel-sandwich hybrid Ribosomal L27 protein
e3l7zF1 F:66-152 OB-fold Nucleic acid-binding proteins Nucleic acid-binding proteins
e3l7zF5 F:153-241 Alpha-lytic protease prodomain-like KH-domains Eukaryotic type KH-domain (KH-domain type I)
e3l7zG3 G:1-184 Ribosomal protein S5 domain 2-like Ribosomal protein S5 domain 2-like Ribosomal protein S5 domain 2-like
e3l7zG4 G:185-270 Ribonuclease PH domain 2-like Ribonuclease PH domain 2 Ribonuclease PH domain 2
e3l7zH2 H:5-152 Ribosomal protein S5 domain 2-like Ribosomal protein S5 domain 2-like Ribosomal protein S5 domain 2-like
e3l7zH1 H:153-238 Ribonuclease PH domain 2-like Ribonuclease PH domain 2 Ribonuclease PH domain 2
e3l7zI3 I:8-65 alpha/beta-Hammerhead/Barrel-sandwich hybrid alpha/beta-Hammerhead/Barrel-sandwich hybrid Ribosomal L27 protein
e3l7zI1 I:66-152 OB-fold Nucleic acid-binding proteins Nucleic acid-binding proteins
e3l7zI2 I:153-226 Alpha-lytic protease prodomain-like KH-domains Eukaryotic type KH-domain (KH-domain type I)

Structural contacts of domain e3l7zG3 of H-group "Ribosomal protein S5 domain 2-like":

The domain and its neighboring domains (both within the asymmetric unit and to crystallographic symmetry mates) are represented by spheres and linked by lines. Distances between the center of the domain and interfaces are shown for each contact.

Domain IDSymmetry operatorH-groupVisualization
e3l7zH1 G:X,Y,Z->H:x,y,z Ribonuclease PH domain 2 Interaction Interface Pymol
e3l7zH2 G:X,Y,Z->H:x,y,z Ribosomal protein S5 domain 2-like Interaction Interface Pymol
e3l7zB2 G:X,Y,Z->B:x,y,z Ribosomal protein S5 domain 2-like Interaction Interface Pymol
e3l7zC4 G:X,Y,Z->C:x,y,z Nucleic acid-binding proteins Interaction Interface Pymol
e3l7zC2 G:X,Y,Z->C:x,y,z KH-domains Interaction Interface Pymol
e3l7zF5 G:X,Y,Z-1->F:x,y,z KH-domains Interaction Interface Pymol
e3l7zF4 G:X,Y,Z-1->F:x,y,z alpha/beta-Hammerhead/Barrel-sandwich hybrid Interaction Interface Pymol
e3l7zI3 G:x,y,z->I:-X+1/2,Y-1/2,-Z+1 alpha/beta-Hammerhead/Barrel-sandwich hybrid Interaction Interface Pymol
e3l7zD3 G:-X+1/2,Y-1/2,-Z+1->D:x,y,z Ribosomal protein S5 domain 2-like Interaction Interface Pymol
e3l7zA3 G:x,y,z->A:X,Y,Z Ribosomal protein S5 domain 2-like Interaction Interface Pymol