Domain ID e3m8sA3

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  • A: a+b two layers
  • X: Alpha-beta plaits
  • H: Adenylyl and guanylyl cyclase catalytic domain-like
  • T: Adenylyl and guanylyl cyclase catalytic domain-like
  • F: DNA_pol_A
UID: 000394839
Type: Automatic domain
Parent: e2hhvA3
Range: A:592-615,A:740-832
Ligands: ACT GOL HXB MG PEG
PDB: 3m8s
PDB Description: DNA POLYMERASE I, THERMOSTABLE
UniProt: P19821
Hsap BLAST neighbor: Q7Z5Q5
Species: Thermus aquaticus

Structure of domain e3m8sA3

Structural contacts of domain e3m8sA3 of H-group "Adenylyl and guanylyl cyclase catalytic domain-like":

The domain and its neighboring domains (both within the asymmetric unit and to crystallographic symmetry mates) are represented by spheres and linked by lines. Distances between the center of the domain and interfaces are shown for each contact.

Domain IDSymmetry operatorH-groupVisualization
e3m8sA3 A:x,y,z->A:X-Y,-Y,-Z-1/3 Adenylyl and guanylyl cyclase catalytic domain-like Interaction Interface Pymol
e3m8sA2 A:x,y,z->A:X-Y,-Y,-Z-1/3 "fingers" domain in bacteriophage RB69-like DNA polymerase I Interaction Interface Pymol
e3m8sA3 A:X-Y,-Y,-Z-1/3->A:x,y,z Adenylyl and guanylyl cyclase catalytic domain-like Interaction Interface Pymol
e3m8sA2 A:X-Y,-Y,-Z-1/3->A:x,y,z "fingers" domain in bacteriophage RB69-like DNA polymerase I Interaction Interface Pymol
e3m8sA2 A:x,y,z->A:-X,-X+Y,-Z+1/3 "fingers" domain in bacteriophage RB69-like DNA polymerase I Interaction Interface Pymol
e3m8sA2 A:-X,-X+Y,-Z+1/3->A:x,y,z "fingers" domain in bacteriophage RB69-like DNA polymerase I Interaction Interface Pymol
e3m8sA3 A:x,y,z->A:-X,-X+Y,-Z-2/3 Adenylyl and guanylyl cyclase catalytic domain-like Interaction Interface Pymol
e3m8sA3 A:-X,-X+Y,-Z-2/3->A:x,y,z Adenylyl and guanylyl cyclase catalytic domain-like Interaction Interface Pymol
e3m8sA4 A:-Y,X-Y-1,Z+1/3->A:x,y,z Ribonuclease H-like Interaction Interface Pymol