ECOD: domain e3mqkA2

Domain ID e3mqkA2

A: a+b two layers
X: Alpha-beta plaits
H: Pseudouridine synthase
T: Pseudouridine synthase
F: TruB_N,DKCLD,TruB_C_2

UID:	000409049
Type:	Automatic domain
Parent:	e2apoA2
Range:	A:11-251
PDB:	3mqk
PDB Description:	TRNA PSEUDOURIDINE SYNTHASE B
UniProt:	Q7LWY0
Hsap BLAST neighbor:	O60832
Species:	Pyrococcus furiosus

Domains in the same chain:

Download Pymol

e3mqkA2	A:11-251	Alpha-beta plaits	Pseudouridine synthase	Pseudouridine synthase
e3mqkA1	A:252-338	cradle loop barrel	RIFT-related	PUA domain

Domains in the same PDB:

e3mqkA2	A:11-251	Alpha-beta plaits	Pseudouridine synthase	Pseudouridine synthase
e3mqkA1	A:252-338	cradle loop barrel	RIFT-related	PUA domain
e3mqkB1	B:4-55	Rubredoxin-like	Nucleolar RNA-binding protein Nop10-like	Nucleolar RNA-binding protein Nop10-like
e3mqkC1	C:1-75	cradle loop barrel	RIFT-related	Alanine racemase-C

Structural contacts of domain e3mqkA2 of H-group "Pseudouridine synthase":

The domain and its neighboring domains (both within the asymmetric unit and to crystallographic symmetry mates) are represented by spheres and linked by lines. Distances between the center of the domain and interfaces are shown for each contact.

Domain ID	Symmetry operator	H-group	Visualization
e3mqkB1	A:X,Y,Z->B:x,y,z	Nucleolar RNA-binding protein Nop10-like	Interaction Interface Pymol
e3mqkC1	A:X,Y,Z->C:x,y,z	RIFT-related	Interaction Interface Pymol
e3mqkC1	A:x,y,z->C:X-Y,-Y+1,-Z	RIFT-related	Interaction Interface Pymol
e3mqkB1	A:X-Y,X,Z-1/6->B:x,y,z	Nucleolar RNA-binding protein Nop10-like	Interaction Interface Pymol
e3mqkA2	A:x,y,z->A:X,X-Y+1,-Z-1/6	Pseudouridine synthase	Interaction Interface Pymol
e3mqkA2	A:X,X-Y+1,-Z-1/6->A:x,y,z	Pseudouridine synthase	Interaction Interface Pymol
e3mqkA2	A:x,y,z->A:X-Y,-Y+1,-Z	Pseudouridine synthase	Interaction Interface Pymol
e3mqkA2	A:X-Y,-Y+1,-Z->A:x,y,z	Pseudouridine synthase	Interaction Interface Pymol