Domain ID e3ofyE2

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  • A: a+b two layers
  • X: Ribosomal protein S5 domain 2-like
  • H: Ribosomal protein S5 domain 2-like
  • T: Ribosomal protein S5 domain 2-like
  • F: Ribosomal_S5_C
UID: 000403224
Type: Automatic domain
Parent: e1pkpA2
Range: E:78-158
Ligands: MG
PDB: 3ofy
PDB Description:
Species:

Structure of domain e3ofyE2

Domains in the same chain:

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e3ofyE1 E:9-77 dsRBD-like dsRNA-binding domain-like dsRNA-binding domain-like
e3ofyE2 E:78-158 Ribosomal protein S5 domain 2-like Ribosomal protein S5 domain 2-like Ribosomal protein S5 domain 2-like

Domains in the same PDB:

e3ofyC2 C:1-105 Alpha-lytic protease prodomain-like KH-domains Prokaryotic type KH domain (KH-domain type II)
e3ofyC1 C:106-206 T-fold Ribosomal protein S3-C Ribosomal protein S3-C
e3ofyE1 E:9-77 dsRBD-like dsRNA-binding domain-like dsRNA-binding domain-like
e3ofyE2 E:78-158 Ribosomal protein S5 domain 2-like Ribosomal protein S5 domain 2-like Ribosomal protein S5 domain 2-like
e3ofyF1 F:1-100 Alpha-beta plaits Ribosomal protein S6 Ribosomal protein S6
e3ofyG1 G:2-151 Ribosomal protein S7 Ribosomal protein S7 Ribosomal protein S7
e3ofyH1 H:1-65 R3H domain-like Ribosomal protein S8, N-terminal domain Ribosomal protein S8, N-terminal domain
e3ofyH2 H:66-129 Ribosomal protein S8, C-terminal domain Ribosomal protein S8, C-terminal domain Ribosomal protein S8, C-terminal domain
e3ofyJ1 J:5-102 Alpha-beta plaits Ribosomal protein S10 Ribosomal protein S10
e3ofyK1 K:12-128 Ribonuclease H-like Ribonuclease H-like Ribonuclease H-like
e3ofyL1 L:1-123 OB-fold Nucleic acid-binding proteins Nucleic acid-binding proteins
e3ofyN1 N:1-100 Glucocorticoid receptor-like LIM domain-like LIM domain-like
e3ofyO1 O:1-88 S15/NS1 RNA-binding domain S15/NS1 RNA-binding domain S15/NS1 RNA-binding domain
e3ofyP1 P:1-80 Ribosomal protein S16 Ribosomal protein S16 Ribosomal protein S16
e3ofyR1 R:19-73 HTH HTH tri-helical
e3ofyT1 T:2-86 Spectrin repeat-like Ribosomal protein S20 Ribosomal protein S20

Structural contacts of domain e3ofyE2 of H-group "Ribosomal protein S5 domain 2-like":

The domain and its neighboring domains (both within the asymmetric unit and to crystallographic symmetry mates) are represented by spheres and linked by lines. Distances between the center of the domain and interfaces are shown for each contact.

Domain IDSymmetry operatorH-groupVisualization
e3ofyH1 E:X,Y,Z->H:x,y,z Ribosomal protein S8, N-terminal domain Interaction Interface Pymol
e3ofyH2 E:X,Y,Z->H:x,y,z Ribosomal protein S8, C-terminal domain Interaction Interface Pymol