Domain ID e3ofyL1

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  • A: beta barrels
  • X: OB-fold
  • H: Nucleic acid-binding proteins
  • T: Nucleic acid-binding proteins
  • F: Ribosom_S12_S23
UID: 000403232
Type: Automatic domain
Parent: e2uubL1
Range: L:1-123
PDB: 3ofy
PDB Description:
Hsap BLAST neighbor: O15235
Species:

Structure of domain e3ofyL1

Domains in the same chain:

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e3ofyL1 L:1-123 OB-fold Nucleic acid-binding proteins Nucleic acid-binding proteins

Domains in the same PDB:

e3ofyC2 C:1-105 Alpha-lytic protease prodomain-like KH-domains Prokaryotic type KH domain (KH-domain type II)
e3ofyC1 C:106-206 T-fold Ribosomal protein S3-C Ribosomal protein S3-C
e3ofyE1 E:9-77 dsRBD-like dsRNA-binding domain-like dsRNA-binding domain-like
e3ofyE2 E:78-158 Ribosomal protein S5 domain 2-like Ribosomal protein S5 domain 2-like Ribosomal protein S5 domain 2-like
e3ofyF1 F:1-100 Alpha-beta plaits Ribosomal protein S6 Ribosomal protein S6
e3ofyG1 G:2-151 Ribosomal protein S7 Ribosomal protein S7 Ribosomal protein S7
e3ofyH1 H:1-65 R3H domain-like Ribosomal protein S8, N-terminal domain Ribosomal protein S8, N-terminal domain
e3ofyH2 H:66-129 Ribosomal protein S8, C-terminal domain Ribosomal protein S8, C-terminal domain Ribosomal protein S8, C-terminal domain
e3ofyJ1 J:5-102 Alpha-beta plaits Ribosomal protein S10 Ribosomal protein S10
e3ofyK1 K:12-128 Ribonuclease H-like Ribonuclease H-like Ribonuclease H-like
e3ofyL1 L:1-123 OB-fold Nucleic acid-binding proteins Nucleic acid-binding proteins
e3ofyN1 N:1-100 Glucocorticoid receptor-like LIM domain-like LIM domain-like
e3ofyO1 O:1-88 S15/NS1 RNA-binding domain S15/NS1 RNA-binding domain S15/NS1 RNA-binding domain
e3ofyP1 P:1-80 Ribosomal protein S16 Ribosomal protein S16 Ribosomal protein S16
e3ofyR1 R:19-73 HTH HTH tri-helical
e3ofyT1 T:2-86 Spectrin repeat-like Ribosomal protein S20 Ribosomal protein S20

Structural contacts of domain e3ofyL1 of H-group "Nucleic acid-binding proteins":

The domain and its neighboring domains (both within the asymmetric unit and to crystallographic symmetry mates) are represented by spheres and linked by lines. Distances between the center of the domain and interfaces are shown for each contact.

Domain IDSymmetry operatorH-groupVisualization
e3ofyH2 L:x,y,z->H:X,Y,Z Ribosomal protein S8, C-terminal domain Interaction Interface Pymol