| UID: | 001290050 |
|---|---|
| Type: | Automatic domain |
| Parent: | e2cl3A2 |
| Range: | J:34-230 |
| PDB: | 3p6y |
| PDB Description: | CLEAVAGE AND POLYADENYLATION SPECIFICITY FACTOR SUBUNIT 5 |
| UniProt: | O43809 |
| Hsap BLAST neighbor: | O43809 |
| Species: | Homo sapiens |
Structure of domain e3p6yJ1
Domains in the same chain:
| e3p6yJ1 | J:34-230 | beta-Grasp | Nudix | Nudix |
Domains in the same PDB:
| e3p6yA1 | A:34-228 | beta-Grasp | Nudix | Nudix |
| e3p6yB1 | B:34-230 | beta-Grasp | Nudix | Nudix |
| e3p6yC2 | C:81-159 | Alpha-beta plaits | RNA-binding domain, RBD | RNA-binding domain, RBD |
| e3p6yD2 | D:81-159 | Alpha-beta plaits | RNA-binding domain, RBD | RNA-binding domain, RBD |
| e3p6yE1 | E:34-228 | beta-Grasp | Nudix | Nudix |
| e3p6yF1 | F:34-230 | beta-Grasp | Nudix | Nudix |
| e3p6yG2 | G:80-159 | Alpha-beta plaits | RNA-binding domain, RBD | RNA-binding domain, RBD |
| e3p6yH2 | H:83-158 | Alpha-beta plaits | RNA-binding domain, RBD | RNA-binding domain, RBD |
| e3p6yI1 | I:34-228 | beta-Grasp | Nudix | Nudix |
| e3p6yJ1 | J:34-230 | beta-Grasp | Nudix | Nudix |
| e3p6yK2 | K:81-160 | Alpha-beta plaits | RNA-binding domain, RBD | RNA-binding domain, RBD |
| e3p6yL2 | L:80-159 | Alpha-beta plaits | RNA-binding domain, RBD | RNA-binding domain, RBD |
| e3p6yM1 | M:34-229 | beta-Grasp | Nudix | Nudix |
| e3p6yN1 | N:34-230 | beta-Grasp | Nudix | Nudix |
| e3p6yO2 | O:81-160 | Alpha-beta plaits | RNA-binding domain, RBD | RNA-binding domain, RBD |
| e3p6yP2 | P:84-158 | Alpha-beta plaits | RNA-binding domain, RBD | RNA-binding domain, RBD |
Structural contacts of domain e3p6yJ1 of H-group "Nudix":
The domain and its neighboring domains (both within the asymmetric unit and to crystallographic symmetry mates) are represented by spheres and linked by lines. Distances between the center of the domain and interfaces are shown for each contact.
| Domain ID | Symmetry operator | H-group | Visualization |
|---|---|---|---|
| e3p6yI1 | J:x,y,z->I:X,Y,Z | Nudix | Interaction Interface Pymol |
| e3p6yK2 | J:X,Y,Z->K:x,y,z | RNA-binding domain, RBD | Interaction Interface Pymol |
| e3p6yG2 | J:-X,Y-1/2,-Z+1->G:x,y,z | RNA-binding domain, RBD | Interaction Interface Pymol |
| e3p6yE1 | J:-X,Y-1/2,-Z+1->E:x,y,z | Nudix | Interaction Interface Pymol |
| e3p6yL2 | J:X,Y,Z->L:x,y,z | RNA-binding domain, RBD | Interaction Interface Pymol |
| e3p6yD2 | J:X,Y,Z->D:x,y,z | RNA-binding domain, RBD | Interaction Interface Pymol |
| e3p6yL2 | J:-X,Y-1/2,-Z+1->L:x,y,z | RNA-binding domain, RBD | Interaction Interface Pymol |
| e3p6yG2 | J:X,Y-1,Z->G:x,y,z | RNA-binding domain, RBD | Interaction Interface Pymol |
