Domain ID e3phdB1

Download files:
  • A: few secondary structure elements
  • X: RING/U-box-like
  • H: RING/U-box-like
  • T: RING/U-box
  • F: zf-UBP
UID: 000413425
Type: Automatic domain
Parent: e2idaA1
Range: B:1-100
Ligands: ZN
PDB: 3phd
PDB Description: HISTONE DEACETYLASE 6
UniProt: Q9UBN7
Hsap BLAST neighbor: Q9UBN7
Species: Homo sapiens

Structure of domain e3phdB1

Structural contacts of domain e3phdB1 of H-group "RING/U-box-like":

The domain and its neighboring domains (both within the asymmetric unit and to crystallographic symmetry mates) are represented by spheres and linked by lines. Distances between the center of the domain and interfaces are shown for each contact.

Domain IDSymmetry operatorH-groupVisualization
e3phdD2 B:X,Y,Z->D:x,y,z RING/U-box-like Interaction Interface Pymol
e3phdC2 B:X,Y,Z->C:x,y,z RING/U-box-like Interaction Interface Pymol
e3phdC2 B:-Y+1/2,X+1/2,Z-1/4->C:x,y,z RING/U-box-like Interaction Interface Pymol
e3phdA1 B:x,y,z->A:X,Y,Z RING/U-box-like Interaction Interface Pymol
e3phdG1 B:-Y+1/2,X+1/2,Z-1/4->G:x,y,z Ubiquitin-related Interaction Interface Pymol