Domain ID e3phdD2

Download files:
  • A: few secondary structure elements
  • X: RING/U-box-like
  • H: RING/U-box-like
  • T: RING/U-box
  • F: zf-UBP
UID: 001218156
Type: Automatic domain
Parent: e2idaA1
Range: D:4-87
Ligands: ZN
PDB: 3phd
PDB Description: HISTONE DEACETYLASE 6
UniProt: Q9UBN7
Hsap BLAST neighbor: Q9UBN7
Species: Homo sapiens

Structure of domain e3phdD2

Structural contacts of domain e3phdD2 of H-group "RING/U-box-like":

The domain and its neighboring domains (both within the asymmetric unit and to crystallographic symmetry mates) are represented by spheres and linked by lines. Distances between the center of the domain and interfaces are shown for each contact.

Domain IDSymmetry operatorH-groupVisualization
e3phdH1 D:X,Y,Z->H:x,y,z Ubiquitin-related Interaction Interface Pymol
e3phdB1 D:x,y,z->B:X,Y,Z RING/U-box-like Interaction Interface Pymol
e3phdA1 D:x,y,z->A:X,Y,Z RING/U-box-like Interaction Interface Pymol
e3phdD2 D:x,y,z->D:-Y,-X,-Z+1/2 RING/U-box-like Interaction Interface Pymol
e3phdD2 D:-Y,-X,-Z+1/2->D:x,y,z RING/U-box-like Interaction Interface Pymol
e3phdC2 D:x,y,z->C:X,Y,Z RING/U-box-like Interaction Interface Pymol
e3phdA1 D:-Y+1/2,X+1/2,Z-1/4->A:x,y,z RING/U-box-like Interaction Interface Pymol
e3phdH1 D:-Y,-X,-Z+1/2->H:x,y,z Ubiquitin-related Interaction Interface Pymol