ECOD: domain e3po2A3

Domain ID e3po2A3

A: a+b complex topology
X: central helical domain in RNA-polymerase beta-prime subunit
H: central helical domain in RNA-polymerase beta-prime subunit
T: central helical domain in RNA-polymerase beta-prime subunit
F: RNA_pol_Rpb1_5

UID:	001308762
Type:	Automatic domain
Parent:	e5fj8A6
Range:	A:1060-1102,A:1301-1454
PDB:	3po2
PDB Description:	DNA-directed RNA polymerase II subunit RPB1
UniProt:	P04050
Hsap BLAST neighbor:	P24928
Species:	Saccharomyces cerevisiae

Domains in the same chain:

Download Pymol

e3po2A6	A:3-336	N-terminal domain in RNA-polymerase beta-prime subunit	N-terminal domain in RNA-polymerase beta-prime subunit	N-terminal domain in RNA-polymerase beta-prime subunit
e3po2A5	A:337-374,A:436-519	cradle loop barrel	RIFT-related	double psi
e3po2A1	A:375-435	MoeA-I/Ornithine decarboxylase-C/Reverse ferredoxin-like domain in RNA-polymerase	MoeA-I/Ornithine decarboxylase-C/Reverse ferredoxin-like domain in RNA-polymerase	MoeA-I/Ornithine decarboxylase-C/Reverse ferredoxin-like domain in RNA-polymerase
e3po2A9	A:520-662	first helical domain in RNA-polymerase beta-prime subunit	first helical domain in RNA-polymerase beta-prime subunit	first helical domain in RNA-polymerase beta-prime subunit
e3po2A7	A:663-871	second helical domain in RNA-polymerase beta-prime subunit	second helical domain in RNA-polymerase beta-prime subunit	second helical domain in RNA-polymerase beta-prime subunit
e3po2A2	A:872-1059	helical domain in yeast RNA-polymerases	third helical domain in yeast RNA-polymerase II beta-prime subunit	third helical domain in yeast RNA-polymerase II beta-prime subunit
e3po2A3	A:1060-1102,A:1301-1454	central helical domain in RNA-polymerase beta-prime subunit	central helical domain in RNA-polymerase beta-prime subunit	central helical domain in RNA-polymerase beta-prime subunit
e3po2A4	A:1103-1131,A:1243-1300	ferredoxin-like domain in yeast RNA-polymerase beta-prime subunit	ferredoxin-like domain in yeast RNA-polymerase beta-prime subunit	ferredoxin-like domain in yeast RNA-polymerase beta-prime subunit
e3po2A8	A:1132-1242	permuted ferredoxin-like domain in yeast RNA-polymerase beta-prime subunit	permuted ferredoxin-like domain in yeast RNA-polymerase beta-prime subunit	permuted ferredoxin-like domain in yeast RNA-polymerase beta-prime subunit

Domains in the same PDB:

Structural contacts of domain e3po2A3 of H-group "central helical domain in RNA-polymerase beta-prime subunit":

The domain and its neighboring domains (both within the asymmetric unit and to crystallographic symmetry mates) are represented by spheres and linked by lines. Distances between the center of the domain and interfaces are shown for each contact.

Domain ID	Symmetry operator	H-group	Visualization
e3po2B7	A:X,Y,Z->B:x,y,z	C-terminal domain in beta subunit of DNA dependent RNA-polymerase	Interaction Interface Pymol
e3po2E2	A:X,Y,Z->E:x,y,z	Eukaryotic RPB5 N-terminal domain	Interaction Interface Pymol
e3po2E1	A:X,Y,Z->E:x,y,z	RPB5-like RNA polymerase subunit	Interaction Interface Pymol
e3po2F1	A:X,Y,Z->F:x,y,z	RPB6/omega subunit-like	Interaction Interface Pymol
e3po2G4	A:X,Y,Z->G:x,y,z	Flavin-binding protein dodecin-like	Interaction Interface Pymol
e3po2G3	A:X,Y,Z->G:x,y,z	Nucleic acid-binding proteins	Interaction Interface Pymol