Domain ID e3pzpB3

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  • A: a+b two layers
  • X: Alpha-beta plaits
  • H: Adenylyl and guanylyl cyclase catalytic domain-like
  • T: Adenylyl and guanylyl cyclase catalytic domain-like
  • F: IMS
UID: 001116300
Type: Automatic domain
Parent: e1t3nA4
Range: B:19-121,B:170-224,B:282-345
Ligands: DTP MG
PDB: 3pzp
PDB Description: DNA POLYMERASE KAPPA
UniProt: Q9UBT6
Hsap BLAST neighbor: Q9UBT6
Species: Homo sapiens

Structure of domain e3pzpB3

Domains in the same chain:

Download Pymol

e3pzpB3 B:19-121,B:170-224,B:282-345 Alpha-beta plaits Adenylyl and guanylyl cyclase catalytic domain-like Adenylyl and guanylyl cyclase catalytic domain-like
e3pzpB4 B:122-169 Hypothetical protein Ta1206-like Hypothetical protein Ta1206-like Hypothetical protein Ta1206-like
e3pzpB1 B:346-405 HhH/H2TH SAM/DNA-glycosylase SAM domain-like
e3pzpB2 B:406-518 Reverse ferredoxin Lesion bypass DNA polymerase (Y-family), little finger domain Lesion bypass DNA polymerase (Y-family), little finger domain

Domains in the same PDB:

e3pzpA5 A:25-121,A:170-223,A:281-345 Alpha-beta plaits Adenylyl and guanylyl cyclase catalytic domain-like Adenylyl and guanylyl cyclase catalytic domain-like
e3pzpA4 A:122-169 Hypothetical protein Ta1206-like Hypothetical protein Ta1206-like Hypothetical protein Ta1206-like
e3pzpA1 A:346-405 HhH/H2TH SAM/DNA-glycosylase SAM domain-like
e3pzpA2 A:406-520 Reverse ferredoxin Lesion bypass DNA polymerase (Y-family), little finger domain Lesion bypass DNA polymerase (Y-family), little finger domain
e3pzpB3 B:19-121,B:170-224,B:282-345 Alpha-beta plaits Adenylyl and guanylyl cyclase catalytic domain-like Adenylyl and guanylyl cyclase catalytic domain-like
e3pzpB4 B:122-169 Hypothetical protein Ta1206-like Hypothetical protein Ta1206-like Hypothetical protein Ta1206-like
e3pzpB1 B:346-405 HhH/H2TH SAM/DNA-glycosylase SAM domain-like
e3pzpB2 B:406-518 Reverse ferredoxin Lesion bypass DNA polymerase (Y-family), little finger domain Lesion bypass DNA polymerase (Y-family), little finger domain

Structural contacts of domain e3pzpB3 of H-group "Adenylyl and guanylyl cyclase catalytic domain-like":

The domain and its neighboring domains (both within the asymmetric unit and to crystallographic symmetry mates) are represented by spheres and linked by lines. Distances between the center of the domain and interfaces are shown for each contact.

Domain IDSymmetry operatorH-groupVisualization
e3pzpA1 B:x,y,z->A:X,Y,Z SAM/DNA-glycosylase Interaction Interface Pymol
e3pzpA5 B:x,y,z->A:X,Y,Z Adenylyl and guanylyl cyclase catalytic domain-like Interaction Interface Pymol
e3pzpA5 B:x,y,z->A:X,-Y,-Z+1 Adenylyl and guanylyl cyclase catalytic domain-like Interaction Interface Pymol
e3pzpB3 B:x,y,z->B:X,-Y,-Z+1 Adenylyl and guanylyl cyclase catalytic domain-like Interaction Interface Pymol
e3pzpB3 B:X,-Y,-Z+1->B:x,y,z Adenylyl and guanylyl cyclase catalytic domain-like Interaction Interface Pymol