Domain ID e3u61D2

Download files:
  • A: a/b three-layered sandwiches
  • X: P-loop domains-like
  • H: P-loop domains-related
  • T: P-loop containing nucleoside triphosphate hydrolases
  • F: AAA
UID: 001395768
Type: Automatic domain
Parent: e1lv7A2
Range: D:0-160
Ligands: 08T MG
PDB: 3u61
PDB Description: DNA POLYMERASE ACCESSORY PROTEIN 44
UniProt: P04526
Hsap BLAST neighbor: P40937
Species:

Structure of domain e3u61D2

Domains in the same chain:

Download Pymol

e3u61D2 D:0-160 P-loop domains-like P-loop domains-related P-loop containing nucleoside triphosphate hydrolases
e3u61D4 D:160-257 Histone-like Histone-related AAA+ ATPase lid domain
e3u61D3 D:258-319 DNA polymerase III clamp loader subunits, C-terminal domain DNA polymerase III clamp loader subunits, C-terminal domain DNA polymerase III clamp loader subunits, C-terminal domain

Domains in the same PDB:

e3u61A2 A:2-108 DNA polymerase III clamp loader subunits, C-terminal domain DNA polymerase III clamp loader subunits, C-terminal domain DNA polymerase III clamp loader subunits, C-terminal domain
e3u61A1 A:117-187 HTH HTH HTH domain in DNA polymerase accessory protein 62
e3u61B1 B:2-159 P-loop domains-like P-loop domains-related P-loop containing nucleoside triphosphate hydrolases
e3u61B4 B:160-257 Histone-like Histone-related AAA+ ATPase lid domain
e3u61B2 B:258-318 DNA polymerase III clamp loader subunits, C-terminal domain DNA polymerase III clamp loader subunits, C-terminal domain DNA polymerase III clamp loader subunits, C-terminal domain
e3u61C2 C:0-159 P-loop domains-like P-loop domains-related P-loop containing nucleoside triphosphate hydrolases
e3u61C3 C:160-257 Histone-like Histone-related AAA+ ATPase lid domain
e3u61C4 C:258-318 DNA polymerase III clamp loader subunits, C-terminal domain DNA polymerase III clamp loader subunits, C-terminal domain DNA polymerase III clamp loader subunits, C-terminal domain
e3u61D2 D:0-160 P-loop domains-like P-loop domains-related P-loop containing nucleoside triphosphate hydrolases
e3u61D4 D:160-257 Histone-like Histone-related AAA+ ATPase lid domain
e3u61D3 D:258-319 DNA polymerase III clamp loader subunits, C-terminal domain DNA polymerase III clamp loader subunits, C-terminal domain DNA polymerase III clamp loader subunits, C-terminal domain
e3u61E1 E:3-164 P-loop domains-like P-loop domains-related P-loop containing nucleoside triphosphate hydrolases
e3u61E3 E:165-213 Histone-like Histone-related AAA+ ATPase lid domain
e3u61E2 E:233-315 DNA polymerase III clamp loader subunits, C-terminal domain DNA polymerase III clamp loader subunits, C-terminal domain DNA polymerase III clamp loader subunits, C-terminal domain
e3u61F1 F:3001-3110 DNA clamp DNA clamp DNA clamp
e3u61F2 F:3111-3222 DNA clamp DNA clamp DNA clamp
e3u61G1 G:1001-1110 DNA clamp DNA clamp DNA clamp
e3u61G2 G:1111-1228 DNA clamp DNA clamp DNA clamp
e3u61H1 H:2001-2110 DNA clamp DNA clamp DNA clamp
e3u61H2 H:2111-2228 DNA clamp DNA clamp DNA clamp

Structural contacts of domain e3u61D2 of H-group "P-loop domains-related":

The domain and its neighboring domains (both within the asymmetric unit and to crystallographic symmetry mates) are represented by spheres and linked by lines. Distances between the center of the domain and interfaces are shown for each contact.

Domain IDSymmetry operatorH-groupVisualization
e3u61C3 D:x,y,z->C:X,Y,Z Histone-related Interaction Interface Pymol
e3u61C2 D:x,y,z->C:X,Y,Z P-loop domains-related Interaction Interface Pymol
e3u61C4 D:x,y,z->C:X,Y,Z DNA polymerase III clamp loader subunits, C-terminal domain Interaction Interface Pymol
e3u61E1 D:X,Y,Z->E:x,y,z P-loop domains-related Interaction Interface Pymol
e3u61G1 D:X,Y,Z->G:x,y,z DNA clamp Interaction Interface Pymol
e3u61H2 D:X,Y,Z->H:x,y,z DNA clamp Interaction Interface Pymol