Domain ID e3u61H1

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  • A: a+b two layers
  • X: DNA clamp
  • H: DNA clamp
  • T: DNA clamp
  • F: DNA_PPF
UID: 001019848
Type: Automatic domain
Parent: e1b77A1
Range: H:2001-2110
PDB: 3u61
PDB Description: DNA POLYMERASE PROCESSIVITY COMPONENT
UniProt: P04525
Species:

Structure of domain e3u61H1

Domains in the same chain:

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e3u61H1 H:2001-2110 DNA clamp DNA clamp DNA clamp
e3u61H2 H:2111-2228 DNA clamp DNA clamp DNA clamp

Domains in the same PDB:

e3u61A2 A:2-108 DNA polymerase III clamp loader subunits, C-terminal domain DNA polymerase III clamp loader subunits, C-terminal domain DNA polymerase III clamp loader subunits, C-terminal domain
e3u61A1 A:117-187 HTH HTH HTH domain in DNA polymerase accessory protein 62
e3u61B1 B:2-159 P-loop domains-like P-loop domains-related P-loop containing nucleoside triphosphate hydrolases
e3u61B4 B:160-257 Histone-like Histone-related AAA+ ATPase lid domain
e3u61B2 B:258-318 DNA polymerase III clamp loader subunits, C-terminal domain DNA polymerase III clamp loader subunits, C-terminal domain DNA polymerase III clamp loader subunits, C-terminal domain
e3u61C2 C:0-159 P-loop domains-like P-loop domains-related P-loop containing nucleoside triphosphate hydrolases
e3u61C3 C:160-257 Histone-like Histone-related AAA+ ATPase lid domain
e3u61C4 C:258-318 DNA polymerase III clamp loader subunits, C-terminal domain DNA polymerase III clamp loader subunits, C-terminal domain DNA polymerase III clamp loader subunits, C-terminal domain
e3u61D2 D:0-160 P-loop domains-like P-loop domains-related P-loop containing nucleoside triphosphate hydrolases
e3u61D4 D:160-257 Histone-like Histone-related AAA+ ATPase lid domain
e3u61D3 D:258-319 DNA polymerase III clamp loader subunits, C-terminal domain DNA polymerase III clamp loader subunits, C-terminal domain DNA polymerase III clamp loader subunits, C-terminal domain
e3u61E1 E:3-164 P-loop domains-like P-loop domains-related P-loop containing nucleoside triphosphate hydrolases
e3u61E3 E:165-213 Histone-like Histone-related AAA+ ATPase lid domain
e3u61E2 E:233-315 DNA polymerase III clamp loader subunits, C-terminal domain DNA polymerase III clamp loader subunits, C-terminal domain DNA polymerase III clamp loader subunits, C-terminal domain
e3u61F1 F:3001-3110 DNA clamp DNA clamp DNA clamp
e3u61F2 F:3111-3222 DNA clamp DNA clamp DNA clamp
e3u61G1 G:1001-1110 DNA clamp DNA clamp DNA clamp
e3u61G2 G:1111-1228 DNA clamp DNA clamp DNA clamp
e3u61H1 H:2001-2110 DNA clamp DNA clamp DNA clamp
e3u61H2 H:2111-2228 DNA clamp DNA clamp DNA clamp

Structural contacts of domain e3u61H1 of H-group "DNA clamp":

The domain and its neighboring domains (both within the asymmetric unit and to crystallographic symmetry mates) are represented by spheres and linked by lines. Distances between the center of the domain and interfaces are shown for each contact.

Domain IDSymmetry operatorH-groupVisualization
e3u61F2 H:x,y,z->F:X,Y,Z DNA clamp Interaction Interface Pymol
e3u61D4 H:x,y,z->D:-X-1,Y-1/2,-Z+1/2 Histone-related Interaction Interface Pymol
e3u61E1 H:x,y,z->E:X,Y,Z P-loop domains-related Interaction Interface Pymol
e3u61A1 H:x,y,z->A:X,Y,Z HTH Interaction Interface Pymol