Domain ID e3u61F2

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  • A: a+b two layers
  • X: DNA clamp
  • H: DNA clamp
  • T: DNA clamp
  • F: gp45-slide_C
UID: 001019845
Type: Automatic domain
Parent: e1b77A2
Range: F:3111-3222
PDB: 3u61
PDB Description: DNA POLYMERASE PROCESSIVITY COMPONENT
UniProt: P04525
Species:

Structure of domain e3u61F2

Domains in the same chain:

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e3u61F1 F:3001-3110 DNA clamp DNA clamp DNA clamp
e3u61F2 F:3111-3222 DNA clamp DNA clamp DNA clamp

Domains in the same PDB:

e3u61A2 A:2-108 DNA polymerase III clamp loader subunits, C-terminal domain DNA polymerase III clamp loader subunits, C-terminal domain DNA polymerase III clamp loader subunits, C-terminal domain
e3u61A1 A:117-187 HTH HTH HTH domain in DNA polymerase accessory protein 62
e3u61B1 B:2-159 P-loop domains-like P-loop domains-related P-loop containing nucleoside triphosphate hydrolases
e3u61B4 B:160-257 Histone-like Histone-related AAA+ ATPase lid domain
e3u61B2 B:258-318 DNA polymerase III clamp loader subunits, C-terminal domain DNA polymerase III clamp loader subunits, C-terminal domain DNA polymerase III clamp loader subunits, C-terminal domain
e3u61C2 C:0-159 P-loop domains-like P-loop domains-related P-loop containing nucleoside triphosphate hydrolases
e3u61C3 C:160-257 Histone-like Histone-related AAA+ ATPase lid domain
e3u61C4 C:258-318 DNA polymerase III clamp loader subunits, C-terminal domain DNA polymerase III clamp loader subunits, C-terminal domain DNA polymerase III clamp loader subunits, C-terminal domain
e3u61D2 D:0-160 P-loop domains-like P-loop domains-related P-loop containing nucleoside triphosphate hydrolases
e3u61D4 D:160-257 Histone-like Histone-related AAA+ ATPase lid domain
e3u61D3 D:258-319 DNA polymerase III clamp loader subunits, C-terminal domain DNA polymerase III clamp loader subunits, C-terminal domain DNA polymerase III clamp loader subunits, C-terminal domain
e3u61E1 E:3-164 P-loop domains-like P-loop domains-related P-loop containing nucleoside triphosphate hydrolases
e3u61E3 E:165-213 Histone-like Histone-related AAA+ ATPase lid domain
e3u61E2 E:233-315 DNA polymerase III clamp loader subunits, C-terminal domain DNA polymerase III clamp loader subunits, C-terminal domain DNA polymerase III clamp loader subunits, C-terminal domain
e3u61F1 F:3001-3110 DNA clamp DNA clamp DNA clamp
e3u61F2 F:3111-3222 DNA clamp DNA clamp DNA clamp
e3u61G1 G:1001-1110 DNA clamp DNA clamp DNA clamp
e3u61G2 G:1111-1228 DNA clamp DNA clamp DNA clamp
e3u61H1 H:2001-2110 DNA clamp DNA clamp DNA clamp
e3u61H2 H:2111-2228 DNA clamp DNA clamp DNA clamp

Structural contacts of domain e3u61F2 of H-group "DNA clamp":

The domain and its neighboring domains (both within the asymmetric unit and to crystallographic symmetry mates) are represented by spheres and linked by lines. Distances between the center of the domain and interfaces are shown for each contact.

Domain IDSymmetry operatorH-groupVisualization
e3u61A2 F:x,y,z->A:X,Y,Z DNA polymerase III clamp loader subunits, C-terminal domain Interaction Interface Pymol
e3u61A1 F:x,y,z->A:X,Y,Z HTH Interaction Interface Pymol
e3u61G2 F:X-1/2,-Y-1/2,-Z->G:x,y,z DNA clamp Interaction Interface Pymol
e3u61G1 F:X-1/2,-Y-1/2,-Z->G:x,y,z DNA clamp Interaction Interface Pymol
e3u61H1 F:X,Y,Z->H:x,y,z DNA clamp Interaction Interface Pymol
e3u61F1 F:X-1/2,-Y-1/2,-Z->F:x,y,z DNA clamp Interaction Interface Pymol
e3u61D3 F:x,y,z->D:-X,Y-1/2,-Z+1/2 DNA polymerase III clamp loader subunits, C-terminal domain Interaction Interface Pymol