Domain ID e3uydH3

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  • A: a+b two layers
  • X: Ribosomal protein S5 domain 2-like
  • H: Ribosomal protein S5 domain 2-like
  • T: Ribosomal protein S5 domain 2-like
  • F: Ribosomal_S5_C
UID: 001277383
Type: Automatic domain
Parent: e1pkpA2
Range: H:73-155
Ligands: MG
PDB: 3uyd
PDB Description:
Species:

Structure of domain e3uydH3

Domains in the same chain:

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e3uydH4 H:5-72 dsRBD-like dsRNA-binding domain-like dsRNA-binding domain-like
e3uydH3 H:73-155 Ribosomal protein S5 domain 2-like Ribosomal protein S5 domain 2-like Ribosomal protein S5 domain 2-like

Domains in the same PDB:

e3uydF2 F:1-105 Alpha-lytic protease prodomain-like KH-domains Prokaryotic type KH domain (KH-domain type II)
e3uydF1 F:106-206 T-fold Ribosomal protein S3-C Ribosomal protein S3-C
e3uydH4 H:5-72 dsRBD-like dsRNA-binding domain-like dsRNA-binding domain-like
e3uydH3 H:73-155 Ribosomal protein S5 domain 2-like Ribosomal protein S5 domain 2-like Ribosomal protein S5 domain 2-like
e3uydI1 I:1-101 Alpha-beta plaits Ribosomal protein S6 Ribosomal protein S6
e3uydJ1 J:1-155 Ribosomal protein S7 Ribosomal protein S7 Ribosomal protein S7
e3uydK1 K:1-66 R3H domain-like Ribosomal protein S8, N-terminal domain Ribosomal protein S8, N-terminal domain
e3uydK2 K:67-138 Ribosomal protein S8, C-terminal domain Ribosomal protein S8, C-terminal domain Ribosomal protein S8, C-terminal domain
e3uydM1 M:1-98 Alpha-beta plaits Ribosomal protein S10 Ribosomal protein S10
e3uydN1 N:1-119 Ribonuclease H-like Ribonuclease H-like Ribonuclease H-like
e3uydO1 O:4-125 OB-fold Nucleic acid-binding proteins Nucleic acid-binding proteins
e3uydQ1 Q:1-60 Glucocorticoid receptor-like LIM domain-like LIM domain-like
e3uydR2 R:2-89 S15/NS1 RNA-binding domain S15/NS1 RNA-binding domain S15/NS1 RNA-binding domain
e3uydS1 S:1-83 Ribosomal protein S16 Ribosomal protein S16 Ribosomal protein S16
e3uydU2 U:17-88 HTH HTH tri-helical
e3uydW1 W:1-99 Spectrin repeat-like Ribosomal protein S20 Ribosomal protein S20

Structural contacts of domain e3uydH3 of H-group "Ribosomal protein S5 domain 2-like":

The domain and its neighboring domains (both within the asymmetric unit and to crystallographic symmetry mates) are represented by spheres and linked by lines. Distances between the center of the domain and interfaces are shown for each contact.

Domain IDSymmetry operatorH-groupVisualization
e3uydK1 H:X,Y,Z->K:x,y,z Ribosomal protein S8, N-terminal domain Interaction Interface Pymol
e3uydK2 H:X,Y,Z->K:x,y,z Ribosomal protein S8, C-terminal domain Interaction Interface Pymol